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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0140200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Leucine rich repeat, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.11 (0.0289) R2 : 0.916
β1 : 1.38 (0.106) R2dD : 0.0329 R2D : -0.145
β2 : 0.917 (0.0685) R2dC : 0.0333 R2C : -0.199
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -3.95 (0.0616) R2dN8 : 1.02 R2N8 : 0.848
σ : 0.543
deviance : 134.27
__
_____
C
peak time of C : 23.5
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
121.8 0.519 7.98 2.45 0.957 0.285 0.148 -3.47 -3.61 23.4 24.8 1980 -- --
132.47 0.54 8.09 1.46 0.874 0.142 0.321 -- -3.9 23.5 22.9 16833 -- --
121.83 0.514 7.98 2.45 0.96 0.285 -- -3.54 -3.61 23.4 24.86 2071 -- --
131.04 0.533 8.09 1.62 0.879 0.383 -- -- -3.86 23.5 14.37 37979 -- --
172.66 0.615 8.03 1.74 -- 0.365 -- -0.879 -3.69 -- 24.86 2071 -- --
133.76 0.542 8.11 1.4 0.919 -- 0.343 -- -3.95 23.5 -- -- -- --
134.27 0.543 8.11 1.38 0.917 -- -- -- -3.95 23.5 -- -- -- --
176.48 0.621 8.05 1.48 -- 0.337 -- -- -3.77 -- 24.86 2071 -- --
143.82 0.559 8.21 -- 0.906 -0.95 -- -- -4.44 23.4 22 47520 -- --
187.08 0.639 8.09 1.41 -- -- -- -- -3.94 -- -- -- -- --
184.76 0.636 8.14 -- 0.933 -- -- -- -4.11 23.6 -- -- -- --
186.21 0.636 8.16 -- -- -0.992 -- -- -4.28 -- 33.41 47520 -- --
239.46 0.722 8.12 -- -- -- -- -- -4.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.36 temperature 20.0 10 > th dose dependent sin 13 NA
4 118.02 wind 3.0 43200 < th dose dependent rect. 11 2
6 118.11 temperature 20.0 270 > th dose dependent rect. 13 19
8 118.29 wind 1.0 43200 < th dose independent rect. 8 5
9 118.32 wind 1.0 43200 > th dose independent rect. 8 5
11 118.37 precipitation 0.1 43200 > th dose dependent rect. 19 1
16 118.57 temperature 20.0 10 > th dose dependent rect. 16 15
19 118.67 wind 1.0 43200 < th dose dependent rect. 8 5
23 119.14 temperature 20.0 90 > th dose dependent rect. 15 16
28 119.24 temperature 20.0 90 > th dose dependent rect. 15 18
31 119.32 wind 3.0 43200 < th dose independent rect. 11 3
33 119.37 wind 1.0 43200 < th dose independent rect. 11 1
43 119.56 temperature 30.0 43200 > th dose dependent rect. 8 1
58 119.58 temperature 30.0 43200 > th dose independent rect. 8 1
72 119.58 temperature 20.0 30 > th dose dependent rect. 13 21
73 119.61 temperature 30.0 43200 < th dose independent rect. 20 13
76 119.62 temperature 30.0 43200 < th dose independent rect. 22 11
80 119.64 temperature 30.0 43200 < th dose independent rect. 5 4
82 119.64 temperature 30.0 43200 < th dose independent rect. 24 9
83 119.65 wind 1.0 43200 > th dose independent rect. 11 2
85 119.65 temperature 30.0 43200 < th dose independent rect. 2 7
88 119.66 temperature 30.0 43200 < th dose independent rect. 8 1
95 119.73 atmosphere 1015.0 43200 < th dose independent rect. 10 1
96 119.74 atmosphere 1015.0 43200 > th dose independent rect. 10 1
110 119.83 atmosphere 1015.0 43200 > th dose independent rect. 1 1
112 119.84 wind 1.0 43200 < th dose dependent rect. 8 18
115 119.89 humidity 90.0 43200 < th dose dependent rect. 3 1
117 119.91 humidity 90.0 43200 < th dose dependent rect. 2 3
123 119.99 wind 3.0 43200 < th dose independent rect. 5 14
125 120.01 temperature 20.0 10 > th dose dependent rect. 16 11
128 120.05 radiation 1.0 43200 < th dose independent rect. 17 1
129 120.07 radiation 1.0 43200 > th dose independent rect. 17 1
130 120.07 wind 3.0 43200 > th dose independent rect. 5 14
131 120.08 radiation 1.0 43200 < th dose independent rect. 17 13
132 120.10 temperature 30.0 43200 > th dose dependent rect. 18 16
133 120.11 temperature 25.0 270 < th dose independent sin 16 NA
135 120.11 humidity 80.0 43200 > th dose independent rect. 18 1
144 120.15 wind 3.0 43200 > th dose independent rect. 10 6
150 120.17 atmosphere 1015.0 43200 < th dose independent rect. 1 1
151 120.17 wind 1.0 43200 > th dose independent rect. 23 3
152 120.18 precipitation 0.1 43200 > th dose independent rect. 19 1
154 120.18 radiation 1.0 43200 > th dose independent rect. 17 13
158 120.19 wind 3.0 43200 < th dose independent rect. 9 7
159 120.20 humidity 60.0 43200 < th dose independent rect. 9 1
175 120.22 precipitation 0.1 14400 > th dose independent rect. 16 2
176 120.22 temperature 20.0 10 > th dose dependent rect. 16 18
182 120.24 wind 3.0 43200 < th dose independent sin 23 NA
187 120.26 humidity 80.0 43200 > th dose independent rect. 19 13
199 120.30 precipitation 0.1 14400 < th dose independent rect. 16 1
202 120.30 precipitation 0.1 14400 < th dose dependent rect. 16 1
203 120.31 precipitation 0.1 43200 < th dose independent rect. 19 1
205 120.31 precipitation 0.1 14400 < th dose independent rect. 16 3
207 120.31 precipitation 0.1 43200 < th dose dependent rect. 19 1
208 120.31 precipitation 0.1 14400 < th dose dependent rect. 16 3
222 120.35 wind 3.0 43200 > th dose independent sin 23 NA
223 120.35 radiation 1.0 14400 < th dose independent rect. 5 1
227 120.35 precipitation 0.1 14400 > th dose dependent rect. 16 1
231 120.36 temperature 25.0 270 > th dose independent rect. 13 18
240 120.39 radiation 1.0 14400 > th dose independent rect. 5 1
241 120.39 humidity 80.0 43200 > th dose independent rect. 3 6
244 120.40 humidity 50.0 43200 < th dose independent rect. 14 1
246 120.40 humidity 80.0 43200 < th dose independent rect. 3 6
258 120.42 temperature 25.0 43200 > th dose dependent rect. 22 1
292 120.47 radiation 1.0 43200 < th dose dependent rect. 5 1
295 120.48 humidity 80.0 43200 < th dose independent sin 9 NA
306 120.50 humidity 80.0 43200 < th dose independent rect. 18 14
346 120.57 temperature 25.0 43200 < th dose independent rect. 23 1
347 120.57 humidity 80.0 43200 < th dose independent rect. 23 11
356 120.58 humidity 80.0 43200 < th dose independent rect. 17 2
371 120.59 wind 1.0 43200 < th dose independent rect. 23 3
381 120.61 radiation 1.0 43200 < th dose independent rect. 24 6
388 120.61 radiation 1.0 43200 < th dose dependent rect. 17 1
390 120.61 wind 3.0 43200 < th dose dependent rect. 4 22
393 120.62 radiation 1.0 43200 < th dose independent rect. 2 4
398 120.62 radiation 1.0 43200 < th dose dependent rect. 22 8
417 120.63 wind 3.0 43200 < th dose dependent sin 0 NA
418 120.63 radiation 1.0 43200 < th dose dependent rect. 24 6
421 120.64 wind 1.0 14400 > th dose independent rect. 8 2
435 120.66 humidity 80.0 43200 > th dose independent sin 10 NA
437 120.66 temperature 25.0 43200 > th dose independent rect. 23 1
441 120.66 radiation 1.0 43200 < th dose independent rect. 17 8
458 120.67 wind 3.0 43200 < th dose dependent rect. 4 18
492 120.71 temperature 20.0 1440 > th dose dependent rect. 4 1
509 120.75 humidity 50.0 43200 > th dose independent rect. 12 3
528 120.76 temperature 25.0 270 < th dose independent rect. 15 11
561 120.77 humidity 80.0 43200 < th dose independent rect. 22 13
572 120.78 wind 5.0 43200 < th dose dependent rect. 5 14
574 120.79 humidity 50.0 43200 > th dose independent rect. 12 1
575 120.79 precipitation 0.1 43200 < th dose independent rect. 23 1
581 120.79 wind 9.0 43200 > th dose dependent rect. 12 1
582 120.79 precipitation 0.1 43200 < th dose dependent rect. 23 1
589 120.80 temperature 25.0 270 > th dose independent rect. 13 13
592 120.80 wind 3.0 43200 < th dose independent rect. 1 20
595 120.81 precipitation 0.1 43200 > th dose independent rect. 23 1
602 120.81 precipitation 0.1 43200 > th dose dependent rect. 23 1
604 120.82 radiation 1.0 43200 < th dose independent sin 12 NA
610 120.82 wind 3.0 43200 < th dose dependent rect. 20 21
612 120.83 radiation 1.0 43200 > th dose independent sin 12 NA
631 120.84 wind 3.0 43200 > th dose independent rect. 1 19
638 120.84 wind 3.0 43200 < th dose dependent rect. 8 23
735 120.91 wind 1.0 43200 > th dose independent rect. 2 1
736 120.91 humidity 60.0 43200 > th dose independent rect. 9 1
799 120.95 humidity 80.0 43200 > th dose dependent rect. 19 1
822 120.97 wind 3.0 43200 < th dose dependent rect. 24 2
823 120.97 temperature 20.0 1440 > th dose dependent rect. 2 4
827 120.98 wind 1.0 43200 < th dose independent rect. 2 1
852 121.00 wind 3.0 43200 < th dose dependent no NA NA
855 121.00 wind 3.0 43200 < th dose dependent rect. 23 23
885 121.03 wind 3.0 43200 > th dose independent rect. 11 20
886 121.03 atmosphere 1010.0 14400 > th dose dependent rect. 11 1
925 121.06 wind 3.0 43200 < th dose independent rect. 11 20
927 121.06 temperature 30.0 43200 > th dose dependent rect. 12 1
930 121.06 temperature 20.0 1440 > th dose dependent rect. 23 7
931 121.06 temperature 20.0 1440 > th dose dependent rect. 21 9
934 121.06 temperature 30.0 43200 > th dose dependent rect. 18 19
937 121.06 wind 3.0 43200 < th dose dependent rect. 15 23
946 121.07 precipitation 0.1 14400 > th dose independent rect. 11 8
947 121.07 precipitation 0.1 14400 < th dose independent rect. 11 8
959 121.07 precipitation 0.1 14400 > th dose dependent rect. 11 8
960 121.07 precipitation 0.1 14400 < th dose dependent rect. 11 8
984 121.08 temperature 30.0 43200 > th dose dependent sin 9 NA
985 121.08 wind 1.0 43200 > th dose dependent rect. 15 1
986 121.08 atmosphere 1010.0 14400 > th dose dependent rect. 3 1