Os06g0140000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Leucine rich repeat, N-terminal domain containing protein.
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Os06g0140000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Leucine rich repeat, N-terminal domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 406.85 | 0.948 | 3.53 | 1.73 | 0.208 | -0.442 | 0.244 | 13.6 | -0.0861 | 19.1 | 30.7 | 4248 | -- | -- |
| 434.01 | 0.97 | 3.91 | -0.446 | 0.0989 | 0.975 | -0.172 | -- | -0.631 | 6.48 | 28.4 | 10922 | -- | -- |
| 405.22 | 0.938 | 3.52 | 1.76 | 0.205 | -0.495 | -- | 13.9 | -0.0834 | 18.6 | 31.2 | 4374 | -- | -- |
| 414.21 | 0.948 | 3.84 | -0.523 | 0.166 | 1.3 | -- | -- | -0.385 | 18.1 | 28.31 | 4045 | -- | -- |
| 405.83 | 0.938 | 3.47 | 2.02 | -- | -0.629 | -- | 14.4 | -0.0718 | -- | 31.4 | 5056 | -- | -- |
| 468.12 | 1.01 | 3.81 | -0.0954 | 0.161 | -- | 0.619 | -- | -0.275 | 22.3 | -- | -- | -- | -- |
| 469.24 | 1.01 | 3.81 | -0.117 | 0.187 | -- | -- | -- | -0.274 | 20.4 | -- | -- | -- | -- |
| 414.75 | 0.949 | 3.81 | -0.477 | -- | 1.33 | -- | -- | -0.287 | -- | 29.2 | 4022 | -- | -- |
| 418.76 | 0.953 | 3.8 | -- | 0.178 | 1.24 | -- | -- | -0.231 | 17.5 | 29.29 | 4042 | -- | -- |
| 471.19 | 1.01 | 3.81 | -0.118 | -- | -- | -- | -- | -0.276 | -- | -- | -- | -- | -- |
| 469.6 | 1.01 | 3.81 | -- | 0.188 | -- | -- | -- | -0.261 | 20.4 | -- | -- | -- | -- |
| 420.41 | 0.955 | 3.8 | -- | -- | 1.23 | -- | -- | -0.235 | -- | 29.28 | 4042 | -- | -- |
| 471.55 | 1.01 | 3.81 | -- | -- | -- | -- | -- | -0.263 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 397.43 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 2 | 399.06 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 4 |
| 6 | 399.62 | temperature | 25 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 16 | 401.18 | temperature | 30 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 22 | 401.72 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 26 | 401.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 7 |
| 48 | 402.24 | temperature | 30 | 4320 | < th | dose independent | rect. | 5 | 7 |
| 59 | 402.45 | temperature | 30 | 4320 | < th | dose independent | rect. | 20 | 16 |
| 79 | 402.94 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 7 |
| 83 | 402.98 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 13 |
| 84 | 402.98 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 20 |
| 101 | 403.09 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 20 |
| 107 | 403.14 | temperature | 30 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 118 | 403.55 | temperature | 25 | 4320 | < th | dose independent | rect. | 19 | 13 |
| 227 | 404.80 | temperature | 30 | 4320 | > th | dose independent | sin | 9 | NA |
| 233 | 404.85 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 243 | 404.94 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 275 | 405.20 | temperature | 30 | 4320 | < th | dose independent | sin | 9 | NA |
| 276 | 405.23 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 9 |
| 277 | 405.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 2 |
| 280 | 405.29 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 281 | 405.30 | temperature | 30 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 286 | 405.47 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 6 |
| 290 | 405.51 | temperature | 30 | 4320 | > th | dose dependent | sin | 8 | NA |
| 319 | 405.79 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 7 |
| 328 | 405.89 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 4 |
| 329 | 405.90 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 332 | 405.97 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 393 | 406.63 | temperature | 25 | 4320 | > th | dose independent | sin | 12 | NA |
| 478 | 407.10 | temperature | 25 | 4320 | < th | dose independent | sin | 12 | NA |
| 528 | 407.31 | temperature | 30 | 4320 | < th | dose independent | rect. | 16 | 5 |
| 556 | 407.49 | temperature | 25 | 4320 | > th | dose dependent | sin | 11 | NA |
| 764 | 408.77 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 804 | 409.03 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 919 | 409.79 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 933 | 409.85 | temperature | 30 | 4320 | > th | dose dependent | no | NA | NA |