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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0139400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0223) R2 : 0.0344
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.189 (0.047) R2dN8 : 0.0444 R2N8 : 0.0344
σ : 0.42
deviance : 81.06
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
74.24 0.405 3.11 -0.151 0.0924 -0.53 0.211 1.92 0.168 15.4 1 16 -- --
77.24 0.409 3.09 -0.0796 0.0752 -0.393 0.436 -- 0.186 15 1.093 16 -- --
74.35 0.402 3.11 -0.151 0.0974 -0.535 -- 2.01 0.168 16.2 1 16 -- --
77.81 0.411 3.09 -0.0688 0.0755 -0.383 -- -- 0.19 15.7 1.096 16 -- --
74.79 0.403 3.11 -0.145 -- -0.476 -- 1.96 0.166 -- 1.027 16 -- --
80.57 0.421 3.09 -0.0324 0.0164 -- -0.346 -- 0.185 2.06 -- -- -- --
80.99 0.421 3.08 -0.0225 0.0324 -- -- -- 0.186 5.79 -- -- -- --
78.08 0.412 3.09 -0.0664 -- -0.34 -- -- 0.188 -- 1.086 16 -- --
77.93 0.411 3.08 -- 0.0746 -0.374 -- -- 0.197 15.7 1.098 16 -- --
81.04 0.421 3.09 -0.0215 -- -- -- -- 0.187 -- -- -- -- --
81 0.421 3.08 -- 0.032 -- -- -- 0.189 5.82 -- -- -- --
78.19 0.412 3.08 -- -- -0.331 -- -- 0.195 -- 1.032 16 -- --
81.06 0.42 3.08 -- -- -- -- -- 0.189 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 62.39 wind 1.0 30 < th dose dependent rect. 2 1
3 62.52 wind 1.0 10 < th dose independent rect. 2 1
14 62.73 atmosphere 1015.0 30 < th dose dependent rect. 2 1
17 62.75 temperature 25.0 30 < th dose independent rect. 2 1
18 62.75 humidity 90.0 30 > th dose independent rect. 2 1
20 62.76 temperature 10.0 30 > th dose independent rect. 2 1
23 62.76 humidity 50.0 30 > th dose independent rect. 2 1
27 62.76 atmosphere 995.0 30 > th dose independent rect. 2 1
28 62.76 atmosphere 1010.0 30 < th dose independent rect. 2 1
30 62.76 radiation 1.0 30 < th dose independent rect. 2 1
35 62.76 precipitation 0.1 30 < th dose independent rect. 2 1
36 62.76 temperature 10.0 30 > th dose independent rect. 3 23
37 62.76 temperature 10.0 30 > th dose dependent rect. 2 1
40 62.76 humidity 50.0 30 > th dose dependent rect. 2 1
44 62.76 radiation 1.0 30 < th dose dependent rect. 2 1
49 62.76 precipitation 0.1 30 < th dose dependent rect. 2 1
50 62.78 atmosphere 1005.0 30 > th dose independent rect. 2 1
52 62.79 atmosphere 995.0 30 > th dose dependent rect. 2 1
54 62.80 temperature 30.0 30 < th dose dependent rect. 2 1
98 63.07 wind 1.0 30 > th dose independent rect. 2 1
104 63.41 atmosphere 995.0 30 > th dose independent rect. 3 23
106 63.48 wind 9.0 30 < th dose independent rect. 3 23
107 63.53 precipitation 0.1 30 < th dose independent rect. 3 23
108 63.53 precipitation 0.1 30 < th dose dependent rect. 3 23
118 64.14 radiation 1.0 4320 < th dose dependent rect. 3 1
137 64.45 wind 9.0 1440 < th dose independent rect. 3 1
138 64.45 temperature 10.0 1440 > th dose independent rect. 3 1
141 64.45 temperature 30.0 1440 < th dose independent rect. 3 1
145 64.45 humidity 50.0 1440 > th dose independent rect. 3 1
154 64.45 atmosphere 995.0 1440 > th dose independent rect. 3 1
155 64.45 radiation 1.0 1440 < th dose independent rect. 3 1
175 64.45 temperature 10.0 1440 > th dose independent rect. 4 23
195 67.05 wind 1.0 30 < th dose independent rect. 24 3
202 67.55 humidity 50.0 30 > th dose independent rect. 3 23
214 68.58 atmosphere 1015.0 30 < th dose independent rect. 3 23
226 68.76 wind 1.0 10 < th dose independent rect. 14 13
283 69.88 wind 3.0 10 < th dose dependent rect. 22 5
305 70.42 temperature 30.0 30 < th dose independent rect. 3 23
330 71.18 humidity 90.0 90 < th dose independent rect. 2 1
376 71.82 radiation 40.0 30 < th dose dependent rect. 3 23
377 71.83 wind 1.0 30 < th dose dependent rect. 10 17
388 72.01 wind 1.0 10 > th dose independent sin 16 NA
471 72.84 humidity 90.0 10 > th dose independent rect. 24 3
495 73.03 radiation 20.0 30 < th dose independent rect. 3 23
503 73.17 wind 1.0 30 > th dose independent rect. 3 23
511 73.22 atmosphere 1015.0 1440 < th dose independent rect. 3 1
521 73.35 temperature 10.0 30 > th dose dependent rect. 3 23
528 73.47 wind 1.0 30 > th dose dependent rect. 2 1
550 73.72 radiation 40.0 30 < th dose independent rect. 3 23
556 73.77 temperature 10.0 90 > th dose dependent rect. 3 6
570 73.88 atmosphere 995.0 90 > th dose dependent rect. 3 6
583 73.96 wind 1.0 10 < th dose independent sin 16 NA
589 73.99 temperature 25.0 270 > th dose independent rect. 23 4
591 74.02 wind 1.0 10 > th dose independent rect. 16 17
593 74.02 wind 9.0 90 < th dose dependent rect. 17 10
611 74.17 wind 1.0 10 > th dose independent rect. 14 19
619 74.21 atmosphere 1000.0 90 > th dose independent rect. 3 6
620 74.21 wind 1.0 10 > th dose independent rect. 16 15
648 74.38 precipitation 0.1 90 < th dose independent rect. 9 18
650 74.38 precipitation 0.1 90 < th dose dependent rect. 9 18
651 74.38 wind 9.0 30 < th dose dependent rect. 3 23
655 74.40 temperature 25.0 10 < th dose independent rect. 24 3
656 74.40 wind 1.0 10 > th dose independent rect. 14 17
662 74.43 wind 9.0 90 < th dose independent rect. 3 6
663 74.43 temperature 10.0 90 > th dose independent rect. 3 6
665 74.43 humidity 50.0 90 > th dose independent rect. 3 6
667 74.43 atmosphere 1015.0 90 < th dose independent rect. 3 6
669 74.43 temperature 10.0 90 > th dose independent rect. 9 18
672 74.44 wind 9.0 90 < th dose dependent rect. 15 12
694 74.52 temperature 30.0 90 < th dose independent rect. 3 6
695 74.52 precipitation 0.1 90 < th dose independent rect. 3 6
696 74.52 precipitation 0.1 90 < th dose dependent rect. 3 6
706 74.56 radiation 30.0 90 < th dose independent rect. 3 8
707 74.56 radiation 40.0 90 < th dose dependent rect. 3 8
731 74.59 radiation 40.0 90 < th dose independent rect. 3 6
733 74.59 wind 9.0 90 < th dose independent rect. 9 18
734 74.59 wind 1.0 10 > th dose independent rect. 13 23
749 74.64 temperature 25.0 10 > th dose independent rect. 24 9
753 74.65 humidity 50.0 90 > th dose dependent rect. 3 8
789 74.80 wind 9.0 90 < th dose dependent rect. 3 6
806 74.85 humidity 50.0 30 > th dose dependent rect. 3 23
811 74.87 wind 1.0 10 > th dose independent no NA NA
821 74.91 wind 1.0 10 > th dose independent rect. 24 10
875 75.00 wind 9.0 90 < th dose dependent rect. 11 16
876 75.01 atmosphere 1015.0 90 < th dose independent rect. 9 18
930 75.14 temperature 25.0 10 > th dose independent rect. 16 17
931 75.14 atmosphere 995.0 90 > th dose independent rect. 9 18
997 75.23 temperature 25.0 10 > th dose independent rect. 14 19