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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0139200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, uncharacterized transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.27 (0.0306) R2 : 0.949
β1 : -1.06 (0.112) R2dD : 0.0103 R2D : -0.312
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -5.99 (0.0654) R2dN8 : 1.26 R2N8 : 0.939
σ : 0.575
deviance : 151.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
125.31 0.526 9.25 -0.929 0.456 -0.611 0.817 0.281 -5.85 18.4 32 1284 -- --
125.35 0.521 9.25 -0.961 0.45 -0.636 0.799 -- -5.86 18.4 34.87 1256 -- --
126.8 0.524 9.24 -0.926 0.471 -0.63 -- 0.331 -5.85 18.3 34.57 1249 -- --
126.98 0.525 9.25 -0.981 0.473 -0.622 -- -- -5.87 18.2 34.96 1249 -- --
137.81 0.547 9.24 -0.927 -- -0.624 -- 0.402 -5.85 -- 34.78 1310 -- --
138.55 0.552 9.27 -1.04 0.463 -- 0.757 -- -5.98 17.5 -- -- -- --
139.88 0.554 9.27 -1.04 0.468 -- -- -- -5.98 17.3 -- -- -- --
137.82 0.547 9.24 -0.991 -- -0.628 -- -- -5.86 -- 35 1310 -- --
151.63 0.574 9.24 -- 0.516 -0.691 -- -- -5.76 18.3 30.05 1248 -- --
151.34 0.575 9.27 -1.06 -- -- -- -- -5.99 -- -- -- -- --
168.44 0.607 9.25 -- 0.486 -- -- -- -5.86 17.2 -- -- -- --
162.85 0.594 9.21 -- -- -0.649 -- -- -5.76 -- 29.97 1334 -- --
180.82 0.628 9.24 -- -- -- -- -- -5.87 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 117.77 temperature 20.0 90 > th dose independent rect. 8 19
2 118.78 atmosphere 1015.0 90 < th dose dependent rect. 3 5
4 118.87 atmosphere 1015.0 270 < th dose dependent rect. 3 2
6 119.61 temperature 10.0 90 > th dose dependent rect. 19 8
7 119.64 atmosphere 1015.0 90 < th dose independent rect. 8 19
9 119.86 temperature 15.0 270 > th dose independent rect. 5 22
10 119.87 humidity 50.0 90 > th dose dependent rect. 3 5
12 120.00 atmosphere 1010.0 90 < th dose independent rect. 3 5
14 120.10 temperature 10.0 43200 > th dose independent rect. 10 5
17 120.24 wind 9.0 90 < th dose dependent rect. 3 5
20 120.30 humidity 80.0 270 > th dose dependent rect. 3 2
25 120.46 temperature 20.0 90 > th dose independent rect. 20 18
31 120.78 atmosphere 1015.0 270 < th dose dependent rect. 1 6
32 120.79 temperature 15.0 90 > th dose independent rect. 19 8
33 120.83 wind 5.0 90 < th dose independent rect. 3 5
39 120.91 temperature 15.0 270 > th dose independent rect. 6 20
42 120.91 wind 7.0 43200 > th dose dependent rect. 21 17
43 120.94 precipitation 0.1 90 < th dose independent rect. 3 5
44 120.94 precipitation 0.1 90 < th dose dependent rect. 3 5
45 120.96 radiation 10.0 43200 > th dose independent rect. 13 1
48 120.99 temperature 10.0 90 > th dose independent rect. 3 5
50 120.99 temperature 30.0 90 < th dose independent rect. 3 5
51 120.99 humidity 50.0 90 > th dose independent rect. 3 5
53 120.99 atmosphere 995.0 90 > th dose independent rect. 3 5
59 121.05 radiation 40.0 90 < th dose independent rect. 3 5
60 121.07 wind 7.0 43200 > th dose independent rect. 22 16
63 121.12 wind 9.0 43200 < th dose independent rect. 11 1
64 121.13 humidity 80.0 90 > th dose independent rect. 3 5
66 121.15 wind 9.0 90 < th dose independent rect. 8 19
67 121.15 wind 7.0 43200 > th dose dependent rect. 1 13
71 121.20 wind 7.0 43200 > th dose independent rect. 1 13
75 121.21 radiation 1.0 270 < th dose dependent rect. 3 8
76 121.22 precipitation 0.1 90 < th dose independent rect. 8 19
78 121.22 precipitation 0.1 90 < th dose dependent rect. 8 19
81 121.23 wind 7.0 43200 < th dose independent rect. 22 16
83 121.24 wind 7.0 43200 > th dose independent sin 6 NA
86 121.27 wind 9.0 43200 > th dose dependent rect. 11 1
89 121.28 humidity 80.0 270 > th dose independent rect. 3 2
91 121.29 wind 7.0 43200 < th dose independent sin 6 NA
92 121.30 wind 7.0 43200 < th dose independent rect. 1 13
93 121.32 wind 7.0 270 < th dose dependent rect. 3 2
102 121.37 wind 9.0 43200 > th dose independent rect. 11 1
108 121.43 temperature 15.0 270 > th dose independent rect. 17 9
109 121.43 wind 9.0 90 < th dose dependent rect. 19 8
115 121.47 atmosphere 1015.0 90 < th dose independent rect. 19 8
119 121.49 wind 7.0 43200 > th dose dependent sin 6 NA
122 121.50 wind 9.0 90 < th dose dependent rect. 8 19
125 121.52 radiation 10.0 4320 > th dose independent rect. 6 1
129 121.56 wind 5.0 90 < th dose independent rect. 19 8
130 121.56 radiation 10.0 4320 > th dose independent rect. 17 15
133 121.58 atmosphere 995.0 90 > th dose independent rect. 8 19
149 121.61 humidity 90.0 270 > th dose independent rect. 1 6
153 121.62 wind 3.0 270 < th dose independent rect. 3 2
164 121.73 wind 9.0 43200 > th dose independent rect. 9 4
184 121.84 radiation 40.0 90 < th dose dependent rect. 3 5
194 121.89 humidity 70.0 90 > th dose independent rect. 19 8
211 121.94 wind 9.0 90 < th dose independent rect. 3 16
212 121.94 radiation 1.0 90 < th dose dependent rect. 19 8
216 121.95 temperature 30.0 90 < th dose independent rect. 19 8
217 121.95 humidity 50.0 90 > th dose independent rect. 19 8
219 121.95 atmosphere 995.0 90 > th dose independent rect. 19 8
220 121.95 radiation 1.0 90 < th dose independent rect. 19 8
226 121.95 temperature 10.0 90 > th dose independent rect. 3 16
227 121.95 atmosphere 1015.0 90 < th dose independent rect. 3 16
249 121.99 temperature 10.0 43200 > th dose independent rect. 10 3
253 122.00 humidity 70.0 270 > th dose dependent rect. 1 6
259 122.02 wind 7.0 43200 > th dose dependent rect. 9 4
260 122.03 wind 9.0 270 < th dose independent rect. 3 2
261 122.03 temperature 10.0 270 > th dose independent rect. 3 2
263 122.03 temperature 30.0 270 < th dose independent rect. 3 2
264 122.03 humidity 50.0 270 > th dose independent rect. 3 2
267 122.03 atmosphere 995.0 270 > th dose independent rect. 3 2
268 122.03 atmosphere 1010.0 270 < th dose independent rect. 3 2
270 122.03 radiation 20.0 270 < th dose independent rect. 3 2
294 122.05 radiation 30.0 270 < th dose dependent rect. 3 2
308 122.08 precipitation 0.1 90 < th dose independent rect. 19 8
311 122.08 precipitation 0.1 90 < th dose dependent rect. 19 8
313 122.09 radiation 1.0 270 < th dose independent rect. 3 2
328 122.11 atmosphere 1015.0 270 < th dose independent rect. 6 20
338 122.13 precipitation 0.1 270 < th dose independent rect. 3 2
340 122.13 precipitation 0.1 270 < th dose dependent rect. 3 2
372 122.23 temperature 20.0 30 > th dose independent rect. 8 6
379 122.25 wind 7.0 43200 > th dose dependent rect. 7 7
383 122.26 precipitation 0.1 270 < th dose independent rect. 5 22
385 122.26 precipitation 0.1 270 < th dose dependent rect. 5 22
405 122.31 temperature 15.0 10 > th dose dependent rect. 20 7
448 122.41 precipitation 0.1 90 < th dose independent rect. 3 16
450 122.41 precipitation 0.1 90 < th dose dependent rect. 3 16
456 122.42 humidity 80.0 90 > th dose dependent rect. 3 9
460 122.43 radiation 1.0 270 < th dose independent rect. 3 8
493 122.53 wind 9.0 43200 > th dose dependent rect. 14 3
494 122.53 temperature 10.0 90 > th dose dependent rect. 3 5
521 122.59 radiation 10.0 4320 > th dose dependent rect. 17 15
534 122.64 wind 9.0 270 < th dose independent rect. 5 22
537 122.65 wind 9.0 43200 < th dose independent rect. 9 4
554 122.69 humidity 50.0 14400 > th dose independent rect. 4 5
556 122.69 radiation 10.0 270 < th dose independent rect. 17 9
578 122.76 radiation 10.0 4320 > th dose dependent rect. 5 3
594 122.77 radiation 10.0 43200 > th dose independent rect. 8 6
597 122.77 precipitation 0.1 270 < th dose independent rect. 17 9
599 122.77 precipitation 0.1 270 < th dose dependent rect. 17 9
606 122.80 humidity 90.0 30 < th dose independent rect. 8 6
627 122.87 humidity 80.0 90 > th dose dependent rect. 3 12
633 122.89 radiation 1.0 270 < th dose independent rect. 3 4
642 122.89 radiation 30.0 270 < th dose dependent rect. 17 9
651 122.92 humidity 50.0 270 > th dose independent rect. 17 9
655 122.92 atmosphere 1015.0 270 < th dose independent rect. 5 22
665 122.94 temperature 10.0 270 > th dose dependent rect. 19 16
677 122.96 humidity 90.0 43200 > th dose independent rect. 10 3
702 123.01 humidity 90.0 90 < th dose independent rect. 1 13
708 123.03 radiation 1.0 270 > th dose independent rect. 6 7
716 123.04 wind 9.0 270 < th dose independent rect. 17 9
747 123.10 precipitation 0.1 270 < th dose independent rect. 6 20
748 123.10 wind 3.0 43200 > th dose dependent rect. 23 8
749 123.10 precipitation 0.1 270 < th dose dependent rect. 6 20
773 123.16 humidity 90.0 43200 > th dose dependent rect. 10 1
786 123.18 temperature 15.0 270 > th dose independent rect. 6 8
797 123.20 wind 9.0 30 < th dose independent rect. 14 18
799 123.20 temperature 10.0 270 > th dose dependent rect. 3 2
836 123.24 temperature 20.0 43200 > th dose independent rect. 17 1
840 123.24 wind 3.0 43200 > th dose dependent rect. 2 2
848 123.26 precipitation 0.1 30 < th dose independent rect. 8 6
853 123.26 wind 3.0 43200 > th dose dependent rect. 1 6
854 123.26 precipitation 0.1 30 < th dose dependent rect. 8 6
856 123.27 wind 1.0 43200 < th dose independent rect. 2 3
874 123.28 temperature 10.0 30 > th dose independent rect. 8 6
876 123.28 temperature 10.0 1440 > th dose independent rect. 9 6
879 123.28 atmosphere 995.0 30 > th dose independent rect. 8 6
880 123.28 atmosphere 1015.0 30 < th dose independent rect. 8 6
881 123.28 temperature 10.0 30 > th dose independent rect. 14 18
882 123.28 temperature 10.0 1440 > th dose independent rect. 15 18
890 123.29 humidity 90.0 270 > th dose independent rect. 1 17
891 123.29 radiation 40.0 30 < th dose independent rect. 14 18
895 123.30 humidity 90.0 43200 < th dose independent rect. 12 1
897 123.30 radiation 10.0 43200 > th dose independent rect. 8 2
904 123.31 wind 9.0 30 < th dose independent rect. 8 6
906 123.31 wind 9.0 43200 < th dose independent rect. 21 23
912 123.32 wind 9.0 43200 < th dose independent rect. 15 22
916 123.33 radiation 40.0 43200 < th dose independent rect. 16 5
964 123.38 humidity 90.0 90 > th dose independent rect. 3 8
971 123.38 humidity 50.0 90 > th dose dependent rect. 19 8
973 123.39 precipitation 0.1 270 < th dose independent rect. 6 8
979 123.39 precipitation 0.1 270 < th dose dependent rect. 6 8
986 123.40 humidity 90.0 270 < th dose independent rect. 23 13