Os06g0139000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0139000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 36.67 | 0.285 | 9.52 | 0.82 | 0.641 | 0.372 | 0.487 | 0.572 | 1.06 | 15.7 | 23.91 | 340 | -- | -- |
| 37.65 | 0.286 | 9.5 | 1.03 | 0.663 | 0.4 | 0.282 | -- | 1.12 | 15.7 | 23.9 | 338 | -- | -- |
| 37.32 | 0.285 | 9.52 | 0.874 | 0.652 | 0.385 | -- | 0.456 | 1.07 | 15.7 | 23.9 | 340 | -- | -- |
| 37.86 | 0.287 | 9.5 | 1.05 | 0.656 | 0.405 | -- | -- | 1.12 | 15.8 | 23.9 | 339 | -- | -- |
| 54.02 | 0.342 | 9.51 | 0.87 | -- | 0.473 | -- | 0.486 | 1.08 | -- | 24.17 | 1034 | -- | -- |
| 48.07 | 0.325 | 9.54 | 0.878 | 0.564 | -- | 0.301 | -- | 0.948 | 15.4 | -- | -- | -- | -- |
| 48.35 | 0.326 | 9.54 | 0.883 | 0.566 | -- | -- | -- | 0.95 | 15.5 | -- | -- | -- | -- |
| 54.57 | 0.344 | 9.5 | 1.04 | -- | 0.492 | -- | -- | 1.1 | -- | 24.2 | 1031 | -- | -- |
| 65.31 | 0.376 | 9.53 | -- | 0.583 | 0.259 | -- | -- | 1.01 | 15.7 | 23.9 | 381 | -- | -- |
| 66.29 | 0.38 | 9.54 | 0.859 | -- | -- | -- | -- | 0.935 | -- | -- | -- | -- | -- |
| 68.91 | 0.388 | 9.56 | -- | 0.548 | -- | -- | -- | 0.852 | 15.5 | -- | -- | -- | -- |
| 80.98 | 0.419 | 9.53 | -- | -- | 0.342 | -- | -- | 0.935 | -- | 24.9 | 1100 | -- | -- |
| 85.77 | 0.432 | 9.56 | -- | -- | -- | -- | -- | 0.84 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.18 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 3 | 37.23 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 9 | 37.46 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 20 |
| 10 | 37.47 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 22 |
| 11 | 37.47 | temperature | 25 | 270 | < th | dose dependent | rect. | 20 | 22 |
| 29 | 37.64 | temperature | 20 | 270 | > th | dose dependent | sin | 7 | NA |
| 30 | 37.66 | temperature | 25 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 34 | 37.70 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 35 | 37.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 11 |
| 40 | 37.76 | temperature | 25 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 45 | 37.80 | temperature | 25 | 270 | < th | dose dependent | rect. | 13 | 23 |
| 64 | 37.98 | temperature | 30 | 270 | < th | dose dependent | rect. | 21 | 13 |
| 97 | 38.15 | temperature | 30 | 270 | < th | dose dependent | sin | 7 | NA |
| 125 | 38.32 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 143 | 38.41 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 15 |
| 162 | 38.47 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 17 |
| 172 | 38.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 13 |
| 199 | 38.61 | temperature | 20 | 30 | > th | dose dependent | rect. | 20 | 23 |
| 212 | 38.67 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 11 |
| 278 | 38.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 342 | 39.05 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 19 |
| 346 | 39.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 5 |
| 368 | 39.13 | temperature | 30 | 90 | < th | dose dependent | rect. | 6 | 7 |
| 420 | 39.27 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 460 | 39.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 500 | 39.43 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 39.57 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 565 | 39.59 | temperature | 30 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 603 | 39.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 633 | 39.69 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 9 |
| 635 | 39.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 17 |
| 674 | 39.74 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 17 |
| 686 | 39.76 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 3 |
| 741 | 39.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 744 | 39.84 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 20 |
| 753 | 39.84 | temperature | 15 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 805 | 39.91 | radiation | 40 | 90 | < th | dose independent | rect. | 6 | 20 |
| 887 | 40.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 19 |
| 913 | 40.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 957 | 40.09 | temperature | 30 | 720 | < th | dose dependent | sin | 13 | NA |
| 959 | 40.09 | radiation | 20 | 1440 | < th | dose dependent | rect. | 16 | 1 |
| 970 | 40.10 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 1 |