Os06g0138900 - FiT-DB

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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0138900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	6.16	(0.0583)	R²	:	0.634
β₁	:	1.26	(0.215)	R²_dD	:	0.0233	R²_D	:	-0.00492
β₂	:	2.12	(0.152)	R²_dC	:	0.163	R²_C	:	0.224
β₃	:	4.58	(0.205)	R²_dE	:	0.412	R²_E	:	0.448
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.0354	(0.125)	R²_dN8	:	0.000304	R²_N8	:	0.00181
σ	:	1.09
deviance	:	544.32
__

_____

C
peak time of C	:	18.7
E
wheather	:	temperature
threshold	:	37.01
memory length	:	80
response mode	:	< th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	6.5
open length of G	:	13.2

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
534.36	1.09	6.2	1.14	2.59	4.15	3.05	0.305	-0.127	17.3	32.18	67	6.55	13.1
533.85	1.08	6.2	1.15	2.51	4.07	3.03	--	-0.139	17.3	32.71	64	6.6	13.2
550.48	1.09	6.21	1.24	2.49	4.37	--	1.23	-0.119	17.6	33.44	57	6.62	13.2
544.32	1.09	6.16	1.26	2.12	4.58	--	--	-0.0354	18.7	37.01	80	6.5	13.2
692.63	1.23	6.14	0.878	--	4.35	--	1.79	-0.0498	--	42.77	7	7.25	13.7
750.6	1.28	6.26	0.475	3.54	--	2.35	--	-0.452	15.9	--	--	--	--
766.61	1.3	6.25	0.506	3.55	--	--	--	-0.439	15.9	--	--	--	--
695.98	1.23	6.14	1.12	--	4.54	--	--	0.0164	--	42.56	60	7.38	12.9
567.6	1.11	6.23	--	1.99	4.38	--	--	-0.285	19.4	40.1	74	6.47	13.2
1457.21	1.78	6.24	0.36	--	--	--	--	-0.533	--	--	--	--	--
773.36	1.3	6.26	--	3.54	--	--	--	-0.495	15.9	--	--	--	--
714.88	1.25	6.16	--	--	4.18	--	--	-0.236	--	44.94	58	7.37	12.9
1460.63	1.78	6.25	--	--	--	--	--	-0.573	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	550.46	temperature	30	90	< th	dose dependent	rect.	6	13
4	554.77	temperature	30	90	< th	dose dependent	rect.	6	7
9	563.04	temperature	15	270	> th	dose dependent	rect.	3	12
10	563.08	temperature	30	90	< th	dose dependent	rect.	6	9
13	564.28	temperature	15	90	> th	dose dependent	rect.	9	9
17	567.95	temperature	15	270	> th	dose dependent	rect.	8	7
18	568.24	temperature	30	10	< th	dose dependent	rect.	7	5
104	589.37	temperature	10	30	> th	dose dependent	rect.	20	22
140	593.51	temperature	25	270	< th	dose dependent	rect.	6	3
145	593.91	temperature	25	270	< th	dose dependent	rect.	7	1
149	594.08	temperature	15	90	> th	dose dependent	sin	0	NA
223	603.11	temperature	15	90	> th	dose independent	rect.	19	23
224	603.27	temperature	15	270	> th	dose dependent	sin	3	NA
271	607.42	temperature	30	270	< th	dose dependent	sin	2	NA
276	607.68	temperature	30	90	< th	dose dependent	sin	0	NA
295	609.09	humidity	90	270	< th	dose independent	rect.	8	8
304	609.66	temperature	30	90	< th	dose dependent	rect.	6	17
328	612.09	temperature	15	1440	> th	dose independent	rect.	8	13
354	614.04	temperature	20	30	> th	dose independent	rect.	10	8
355	614.06	humidity	90	30	< th	dose independent	rect.	10	8
416	618.29	temperature	25	270	> th	dose independent	rect.	8	7
417	618.40	humidity	90	270	> th	dose independent	rect.	6	11
424	619.03	temperature	25	270	> th	dose independent	rect.	4	11
433	619.63	humidity	90	270	> th	dose dependent	rect.	6	11
451	620.82	temperature	15	4320	> th	dose independent	rect.	19	1
455	621.05	atmosphere	1010	30	< th	dose independent	rect.	10	8
473	621.94	temperature	15	270	> th	dose dependent	rect.	20	19
503	622.95	humidity	90	270	> th	dose independent	rect.	6	9
519	623.52	humidity	90	270	> th	dose independent	rect.	6	6
543	624.30	atmosphere	1010	30	< th	dose independent	rect.	20	22
568	625.29	humidity	90	270	> th	dose dependent	rect.	6	6
584	625.98	atmosphere	995	90	> th	dose dependent	rect.	6	14
614	627.53	atmosphere	995	10	> th	dose dependent	rect.	7	13
658	628.87	temperature	25	270	< th	dose independent	rect.	5	6
721	631.19	temperature	30	90	< th	dose independent	rect.	6	14
766	632.53	humidity	60	30	> th	dose dependent	rect.	7	13
776	633.04	atmosphere	1015	10	< th	dose dependent	rect.	10	8
866	635.71	temperature	15	4320	> th	dose independent	rect.	8	3
993	638.82	temperature	25	10	< th	dose independent	rect.	7	6