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Os06g0137600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribosome-binding factor A family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.77 (0.0258) R2 : 0.777
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -3.13 (0.0828) R2dE : 0.684 R2E : 0.712
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.542 (0.0546) R2dN8 : 0.065 R2N8 : 0.0929
σ : 0.483
deviance : 107.76
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_____
C
peak time of C : --
E
wheather : temperature
threshold : -29.82
memory length : 962
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 14.6
open length of G : 16.2

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
73.42 0.403 9.77 0.793 2.39 -2.47 -1.56 2.21 -0.354 21.2 6.611 271 16.2 14.8
80.97 0.419 9.8 0.571 2.41 -2.38 -0.576 -- -0.406 21.2 5.019 257 16.3 14.9
78.8 0.413 9.77 0.72 2.37 -2.49 -- 1.16 -0.363 21.3 6 259 16.5 14.7
81.7 0.421 9.81 0.588 2.39 -2.35 -- -- -0.442 21.2 3.521 264 16.3 14.7
84.23 0.427 9.69 1.04 -- -3.46 -- 2.98 -0.367 -- -5.059 921 15.7 14.4
131.74 0.538 9.83 0.37 2.38 -- -1.73 -- -0.69 17.9 -- -- -- --
139.09 0.552 9.84 0.383 2.37 -- -- -- -0.697 17.9 -- -- -- --
97.64 0.46 9.72 0.678 -- -3.12 -- -- -0.509 -- -18.5 958 15 15.1
87.91 0.437 9.83 -- 2.51 -2.75 -- -- -0.487 22.2 -7.775 266 16.5 14.5
431.09 0.97 9.8 0.31 -- -- -- -- -0.752 -- -- -- -- --
142.94 0.559 9.85 -- 2.37 -- -- -- -0.74 17.9 -- -- -- --
107.76 0.483 9.77 -- -- -3.13 -- -- -0.542 -- -29.82 962 14.6 16.2
433.63 0.972 9.81 -- -- -- -- -- -0.787 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 75.96 temperature 10.0 270 > th dose dependent rect. 16 15
3 78.70 temperature 20.0 270 > th dose independent rect. 14 18
5 79.00 temperature 10.0 270 > th dose dependent rect. 2 6
6 79.05 temperature 20.0 90 > th dose independent rect. 17 16
7 79.06 temperature 10.0 270 > th dose dependent rect. 3 4
13 80.00 temperature 20.0 90 > th dose independent rect. 4 19
18 80.77 temperature 20.0 270 > th dose independent rect. 2 19
32 82.52 temperature 10.0 270 > th dose dependent rect. 2 20
39 82.83 temperature 20.0 270 > th dose independent rect. 3 4
41 82.91 temperature 15.0 270 > th dose dependent rect. 4 2
48 83.18 temperature 20.0 270 > th dose independent rect. 2 6
61 83.87 temperature 10.0 270 > th dose dependent rect. 3 18
68 84.15 radiation 20.0 270 < th dose independent rect. 3 4
69 84.22 precipitation 0.1 270 < th dose independent rect. 7 20
70 84.22 precipitation 0.1 270 < th dose dependent rect. 7 20
71 84.30 humidity 70.0 270 > th dose independent rect. 3 4
73 84.33 wind 9.0 270 < th dose independent rect. 7 20
76 84.38 wind 9.0 270 < th dose independent rect. 3 4
77 84.38 temperature 10.0 270 > th dose independent rect. 3 4
79 84.38 temperature 30.0 270 < th dose independent rect. 3 4
80 84.38 humidity 50.0 270 > th dose independent rect. 3 4
82 84.38 atmosphere 995.0 270 > th dose independent rect. 3 4
83 84.38 atmosphere 1015.0 270 < th dose independent rect. 3 4
85 84.38 temperature 10.0 270 > th dose independent rect. 7 20
90 84.49 temperature 30.0 270 < th dose dependent rect. 20 7
92 84.52 precipitation 0.1 270 < th dose independent rect. 3 4
93 84.52 precipitation 0.1 270 < th dose dependent rect. 3 4
95 84.55 radiation 40.0 270 < th dose dependent rect. 3 4
104 84.81 humidity 50.0 270 > th dose dependent rect. 3 4
112 85.03 wind 9.0 270 < th dose dependent rect. 3 4
122 85.58 temperature 15.0 10 > th dose dependent rect. 18 15
135 85.90 atmosphere 1010.0 270 < th dose independent rect. 13 9
146 86.23 wind 7.0 270 < th dose independent rect. 20 7
151 86.34 temperature 30.0 10 < th dose dependent rect. 22 7
153 86.39 precipitation 0.1 270 < th dose independent rect. 8 18
154 86.39 precipitation 0.1 270 < th dose dependent rect. 8 18
159 86.64 wind 9.0 270 < th dose independent rect. 8 18
160 86.65 wind 9.0 270 < th dose independent rect. 2 6
161 86.65 temperature 10.0 270 > th dose independent rect. 2 6
163 86.65 temperature 30.0 270 < th dose independent rect. 2 6
164 86.65 humidity 50.0 270 > th dose independent rect. 2 6
166 86.65 atmosphere 995.0 270 > th dose independent rect. 2 6
167 86.65 atmosphere 1015.0 270 < th dose independent rect. 2 6
168 86.65 radiation 20.0 270 < th dose independent rect. 2 6
169 86.65 temperature 10.0 270 > th dose independent rect. 8 18
171 86.71 precipitation 0.1 270 < th dose independent rect. 2 6
172 86.71 precipitation 0.1 270 < th dose dependent rect. 2 6
180 86.84 radiation 40.0 270 < th dose independent rect. 2 6
188 87.03 radiation 30.0 270 < th dose independent rect. 16 15
190 87.10 temperature 10.0 270 > th dose independent rect. 20 7
191 87.10 temperature 30.0 270 < th dose independent rect. 20 7
192 87.10 humidity 50.0 270 > th dose independent rect. 20 7
195 87.10 atmosphere 995.0 270 > th dose independent rect. 20 7
196 87.10 radiation 1.0 270 < th dose independent rect. 20 7
202 87.10 atmosphere 1015.0 270 < th dose independent rect. 3 17
203 87.10 radiation 1.0 270 < th dose dependent rect. 20 7
213 87.18 temperature 10.0 270 > th dose independent rect. 7 9
214 87.18 atmosphere 1015.0 270 < th dose independent rect. 7 9
221 87.36 precipitation 0.1 270 < th dose independent rect. 20 7
223 87.36 precipitation 0.1 270 < th dose dependent rect. 20 7
225 87.39 wind 9.0 270 < th dose independent rect. 7 9
231 87.47 temperature 15.0 270 > th dose independent rect. 13 9
235 87.50 temperature 10.0 10 > th dose dependent rect. 5 18
241 87.58 wind 1.0 270 > th dose independent rect. 7 20
244 87.63 precipitation 0.1 270 < th dose independent rect. 7 9
245 87.63 precipitation 0.1 270 < th dose dependent rect. 7 9
253 87.77 wind 9.0 270 < th dose independent rect. 16 15
259 87.89 wind 1.0 270 > th dose independent rect. 7 9
272 88.10 wind 9.0 270 < th dose independent rect. 3 17
285 88.16 wind 1.0 270 > th dose independent rect. 8 18
291 88.18 atmosphere 995.0 270 > th dose independent rect. 7 20
298 88.25 radiation 10.0 270 < th dose independent rect. 4 2
325 88.41 humidity 50.0 270 > th dose dependent rect. 2 6
327 88.43 temperature 30.0 270 < th dose dependent rect. 7 20
335 88.51 precipitation 0.1 270 < th dose independent rect. 3 17
336 88.51 precipitation 0.1 270 < th dose dependent rect. 3 17
362 88.69 atmosphere 1010.0 270 < th dose independent rect. 15 16
365 88.71 temperature 30.0 90 < th dose dependent rect. 9 19
368 88.72 wind 9.0 270 < th dose dependent rect. 2 6
371 88.75 atmosphere 995.0 270 > th dose independent rect. 7 9
398 88.89 wind 7.0 270 < th dose independent rect. 4 2
400 88.91 precipitation 0.1 270 < th dose independent rect. 4 2
401 88.91 precipitation 0.1 270 < th dose dependent rect. 4 2
402 88.94 atmosphere 1010.0 270 < th dose independent rect. 4 2
411 88.99 temperature 10.0 270 > th dose independent rect. 4 2
413 88.99 temperature 30.0 270 < th dose independent rect. 4 2
414 88.99 humidity 50.0 270 > th dose independent rect. 4 2
417 88.99 atmosphere 995.0 270 > th dose independent rect. 4 2
422 88.99 temperature 10.0 270 > th dose independent rect. 6 22
423 89.00 atmosphere 995.0 270 > th dose independent rect. 16 15
441 89.03 radiation 40.0 270 < th dose dependent rect. 4 2
468 89.33 radiation 40.0 270 < th dose dependent rect. 15 16
480 89.42 wind 9.0 270 < th dose dependent rect. 4 2
485 89.46 temperature 30.0 270 < th dose dependent rect. 22 3
488 89.49 precipitation 0.1 270 < th dose independent rect. 16 15
489 89.49 precipitation 0.1 270 < th dose dependent rect. 16 15
529 89.89 atmosphere 995.0 270 > th dose independent rect. 8 18
534 89.94 atmosphere 995.0 270 > th dose independent rect. 3 17
547 90.06 atmosphere 1015.0 270 < th dose independent rect. 2 19
553 90.17 temperature 15.0 10 > th dose dependent rect. 5 4
569 90.29 humidity 50.0 270 > th dose independent rect. 7 20
572 90.35 wind 7.0 270 < th dose independent rect. 21 5
575 90.36 temperature 30.0 10 < th dose dependent rect. 9 20
591 90.50 temperature 10.0 270 > th dose dependent rect. 11 22
649 90.72 radiation 20.0 90 < th dose independent rect. 4 18
703 91.23 radiation 40.0 90 < th dose independent rect. 4 18
717 91.34 temperature 10.0 270 > th dose independent rect. 21 5
718 91.34 temperature 30.0 270 < th dose independent rect. 21 5
719 91.34 humidity 50.0 270 > th dose independent rect. 21 5
722 91.34 atmosphere 995.0 270 > th dose independent rect. 21 5
723 91.34 radiation 1.0 270 < th dose independent rect. 21 5
730 91.34 radiation 1.0 270 < th dose dependent rect. 21 5
747 91.43 precipitation 0.1 270 < th dose independent rect. 21 5
748 91.43 precipitation 0.1 270 < th dose dependent rect. 21 5
753 91.53 atmosphere 995.0 270 > th dose dependent rect. 21 5
760 91.61 atmosphere 995.0 270 > th dose dependent rect. 3 4
770 91.72 wind 1.0 270 > th dose independent rect. 20 7
793 91.80 temperature 10.0 270 > th dose dependent rect. 13 9
836 91.99 radiation 1.0 90 < th dose dependent sin 11 NA
845 92.05 wind 9.0 14400 < th dose independent rect. 5 4
888 92.23 temperature 30.0 90 < th dose dependent rect. 11 17
892 92.25 humidity 50.0 270 > th dose independent rect. 7 8
906 92.33 humidity 50.0 270 > th dose independent rect. 8 18
908 92.36 wind 9.0 270 < th dose independent rect. 2 19
910 92.38 wind 9.0 270 < th dose dependent rect. 20 7
919 92.43 temperature 10.0 270 > th dose independent rect. 22 15
920 92.43 atmosphere 995.0 270 > th dose independent rect. 22 15
941 92.63 precipitation 0.1 270 < th dose independent rect. 2 19
943 92.63 precipitation 0.1 270 < th dose dependent rect. 2 19
948 92.68 radiation 40.0 90 < th dose dependent rect. 4 18
967 92.91 atmosphere 995.0 270 > th dose dependent rect. 4 2
981 93.00 wind 9.0 270 < th dose independent rect. 22 15
988 93.05 precipitation 0.1 270 < th dose independent rect. 22 15
990 93.05 precipitation 0.1 270 < th dose dependent rect. 22 15