Os06g0134700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os06g0134700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 268.1 | 0.769 | 5.47 | 1.23 | 2.54 | -2.16 | 1.31 | -0.75 | -0.204 | 19.4 | 30.06 | 91 | -- | -- |
| 268.78 | 0.764 | 5.49 | 1.11 | 2.55 | -2.14 | 1.32 | -- | -0.229 | 19.4 | 30.2 | 89 | -- | -- |
| 272.64 | 0.769 | 5.47 | 1.2 | 2.55 | -2.15 | -- | -0.761 | -0.192 | 19.3 | 30.37 | 85 | -- | -- |
| 273.23 | 0.77 | 5.48 | 1.08 | 2.55 | -2.21 | -- | -- | -0.202 | 19.3 | 31.54 | 73 | -- | -- |
| 494.11 | 1.04 | 5.44 | 0.891 | -- | -4.24 | -- | -1.63 | -0.406 | -- | 49.44 | 388 | -- | -- |
| 328.41 | 0.85 | 5.4 | 1.62 | 2.9 | -- | 1.24 | -- | 0.177 | 18.5 | -- | -- | -- | -- |
| 332.17 | 0.853 | 5.39 | 1.6 | 2.91 | -- | -- | -- | 0.181 | 18.5 | -- | -- | -- | -- |
| 495.97 | 1.04 | 5.47 | 0.628 | -- | -4.29 | -- | -- | -0.477 | -- | 70.74 | 388 | -- | -- |
| 301.39 | 0.809 | 5.52 | -- | 2.51 | -2.61 | -- | -- | -0.349 | 19.6 | 30.63 | 83 | -- | -- |
| 772.49 | 1.3 | 5.34 | 1.53 | -- | -- | -- | -- | 0.12 | -- | -- | -- | -- | -- |
| 399.64 | 0.935 | 5.43 | -- | 2.89 | -- | -- | -- | 0.00287 | 18.5 | -- | -- | -- | -- |
| 505.17 | 1.05 | 5.5 | -- | -- | -4.43 | -- | -- | -0.582 | -- | 33.28 | 391 | -- | -- |
| 833.93 | 1.35 | 5.38 | -- | -- | -- | -- | -- | -0.0492 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 252.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 20 |
| 14 | 259.75 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 34 | 263.32 | temperature | 25 | 270 | < th | dose independent | rect. | 2 | 19 |
| 39 | 263.97 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 22 |
| 52 | 265.71 | temperature | 20 | 30 | > th | dose dependent | rect. | 9 | 17 |
| 74 | 267.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 82 | 267.89 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 86 | 268.10 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 87 | 268.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 88 | 268.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 4 | 23 |
| 89 | 268.22 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 92 | 268.24 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 93 | 268.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 98 | 268.39 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 110 | 268.61 | temperature | 30 | 90 | < th | dose dependent | rect. | 7 | 14 |
| 111 | 268.68 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 121 | 268.84 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 124 | 268.96 | temperature | 25 | 90 | < th | dose independent | sin | 22 | NA |
| 153 | 269.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 156 | 269.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 190 | 270.25 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 15 |
| 241 | 271.09 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 277 | 271.66 | temperature | 10 | 10 | > th | dose dependent | sin | 21 | NA |
| 288 | 271.90 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 290 | 271.96 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 15 |
| 311 | 272.26 | temperature | 25 | 90 | < th | dose independent | rect. | 6 | 17 |
| 321 | 272.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 369 | 272.94 | temperature | 25 | 90 | > th | dose independent | sin | 22 | NA |
| 399 | 273.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 461 | 274.19 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 23 |
| 500 | 274.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 13 |
| 526 | 274.90 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 21 |
| 585 | 275.45 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 606 | 275.66 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 12 |
| 647 | 276.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 19 |
| 701 | 276.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 10 | 12 |
| 729 | 276.76 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 757 | 276.98 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 23 |
| 781 | 277.19 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 15 |
| 814 | 277.48 | temperature | 25 | 90 | > th | dose independent | rect. | 8 | 18 |
| 827 | 277.60 | temperature | 25 | 270 | > th | dose independent | rect. | 19 | 23 |
| 833 | 277.64 | temperature | 25 | 90 | < th | dose independent | rect. | 9 | 14 |
| 835 | 277.64 | temperature | 25 | 270 | < th | dose independent | rect. | 8 | 23 |
| 839 | 277.68 | temperature | 25 | 270 | < th | dose independent | rect. | 13 | 23 |
| 843 | 277.71 | temperature | 25 | 270 | < th | dose independent | rect. | 15 | 23 |
| 870 | 277.92 | temperature | 25 | 90 | < th | dose independent | rect. | 11 | 12 |
| 927 | 278.40 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 23 |
| 959 | 278.65 | temperature | 25 | 270 | > th | dose independent | no | NA | NA |