Os06g0134200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0134200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 114.45 | 0.498 | 3.05 | -0.615 | 0.422 | -0.12 | -1.7 | 2.89 | -0.137 | 6.77 | 10 | 4321 | -- | -- |
| 120.95 | 0.516 | 3.12 | -0.722 | 0.414 | -0.27 | -1.77 | -- | -0.173 | 5.91 | 19.63 | 4526 | -- | -- |
| 121.58 | 0.514 | 3.05 | -0.64 | 0.404 | -0.115 | -- | 2.92 | -0.134 | 6.81 | 10 | 4384 | -- | -- |
| 128.33 | 0.531 | 3.11 | -0.741 | 0.414 | -0.321 | -- | -- | -0.163 | 5.17 | 19.12 | 4168 | -- | -- |
| 130.61 | 0.532 | 3.05 | -0.627 | -- | -0.115 | -- | 2.94 | -0.12 | -- | 10 | 4389 | -- | -- |
| 125.65 | 0.525 | 3.12 | -0.703 | 0.42 | -- | -1.7 | -- | -0.177 | 6.77 | -- | -- | -- | -- |
| 132.5 | 0.539 | 3.11 | -0.728 | 0.421 | -- | -- | -- | -0.17 | 7.6 | -- | -- | -- | -- |
| 136.89 | 0.547 | 3.12 | -0.726 | -- | -0.249 | -- | -- | -0.155 | -- | 19.12 | 4168 | -- | -- |
| 142.79 | 0.56 | 3.1 | -- | 0.397 | -0.301 | -- | -- | -0.081 | 5.39 | 19.12 | 4168 | -- | -- |
| 141.99 | 0.557 | 3.12 | -0.722 | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
| 146.46 | 0.566 | 3.09 | -- | 0.415 | -- | -- | -- | -0.0892 | 7.73 | -- | -- | -- | -- |
| 150.43 | 0.573 | 3.1 | -- | -- | -0.228 | -- | -- | -0.0677 | -- | 9.93 | 7241 | -- | -- |
| 155.74 | 0.583 | 3.1 | -- | -- | -- | -- | -- | -0.0838 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 24 | 9 |
| 4 | 111.23 | humidity | 80 | 720 | < th | dose independent | rect. | 23 | 4 |
| 8 | 111.31 | humidity | 80 | 720 | < th | dose dependent | rect. | 23 | 4 |
| 13 | 111.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 10 |
| 14 | 111.56 | temperature | 25 | 270 | < th | dose dependent | rect. | 3 | 6 |
| 24 | 112.45 | temperature | 25 | 720 | < th | dose dependent | rect. | 1 | 1 |
| 25 | 112.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 6 |
| 32 | 112.72 | temperature | 15 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 34 | 112.73 | temperature | 15 | 14400 | < th | dose dependent | sin | 23 | NA |
| 39 | 112.74 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 18 |
| 47 | 112.78 | temperature | 15 | 14400 | < th | dose dependent | sin | 20 | NA |
| 54 | 112.80 | temperature | 15 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 55 | 112.81 | temperature | 15 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 57 | 112.81 | temperature | 15 | 14400 | < th | dose dependent | rect. | 18 | 5 |
| 58 | 112.81 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 14 |
| 69 | 112.83 | temperature | 15 | 14400 | < th | dose dependent | rect. | 9 | 14 |
| 71 | 112.84 | temperature | 15 | 14400 | < th | dose independent | rect. | 7 | 16 |
| 80 | 112.86 | temperature | 15 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 104 | 112.94 | temperature | 15 | 14400 | < th | dose dependent | rect. | 12 | 12 |
| 107 | 112.95 | temperature | 15 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 108 | 112.95 | temperature | 15 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 111 | 112.96 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 12 |
| 118 | 112.97 | temperature | 15 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 132 | 113.00 | humidity | 80 | 720 | > th | dose independent | rect. | 23 | 8 |
| 155 | 113.08 | temperature | 15 | 14400 | < th | dose independent | sin | 21 | NA |
| 161 | 113.10 | temperature | 15 | 14400 | > th | dose independent | rect. | 10 | 13 |
| 165 | 113.11 | temperature | 15 | 14400 | > th | dose independent | rect. | 7 | 16 |
| 179 | 113.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 195 | 113.26 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 196 | 113.26 | temperature | 15 | 14400 | < th | dose independent | rect. | 19 | 4 |
| 200 | 113.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 202 | 113.28 | wind | 9 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 223 | 113.34 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 3 |
| 249 | 113.45 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 258 | 113.47 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 1 |
| 272 | 113.51 | temperature | 15 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 300 | 113.60 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 304 | 113.61 | temperature | 15 | 14400 | > th | dose independent | rect. | 19 | 4 |
| 311 | 113.63 | temperature | 25 | 720 | < th | dose dependent | sin | 10 | NA |
| 312 | 113.64 | temperature | 15 | 14400 | > th | dose independent | sin | 21 | NA |
| 325 | 113.66 | temperature | 15 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 338 | 113.69 | temperature | 15 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 371 | 113.80 | radiation | 10 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 392 | 113.86 | temperature | 15 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 411 | 113.92 | temperature | 15 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 459 | 114.03 | humidity | 80 | 720 | > th | dose independent | rect. | 21 | 10 |
| 468 | 114.05 | radiation | 1 | 720 | > th | dose independent | rect. | 4 | 1 |
| 479 | 114.05 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 1 |
| 545 | 114.19 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 568 | 114.23 | radiation | 10 | 4320 | < th | dose independent | sin | 12 | NA |
| 678 | 114.37 | wind | 3 | 14400 | < th | dose independent | rect. | 10 | 2 |
| 688 | 114.38 | wind | 5 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 689 | 114.38 | wind | 1 | 14400 | > th | dose independent | rect. | 18 | 6 |
| 691 | 114.38 | radiation | 10 | 4320 | < th | dose independent | rect. | 6 | 12 |
| 694 | 114.38 | temperature | 20 | 720 | > th | dose dependent | sin | 10 | NA |
| 706 | 114.40 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 708 | 114.40 | radiation | 10 | 4320 | < th | dose independent | rect. | 24 | 18 |
| 711 | 114.40 | temperature | 25 | 270 | < th | dose dependent | sin | 6 | NA |
| 717 | 114.41 | wind | 5 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 731 | 114.41 | temperature | 15 | 43200 | < th | dose dependent | rect. | 15 | 2 |
| 764 | 114.43 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 5 |
| 768 | 114.43 | wind | 3 | 14400 | < th | dose dependent | rect. | 19 | 5 |
| 782 | 114.45 | radiation | 10 | 4320 | < th | dose independent | no | NA | NA |
| 853 | 114.46 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 15 |
| 872 | 114.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 973 | 114.51 | temperature | 15 | 43200 | < th | dose dependent | no | NA | NA |
| 996 | 114.51 | temperature | 15 | 43200 | < th | dose dependent | rect. | 11 | 23 |