Os06g0133300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0133300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 233.4 | 0.718 | 3.81 | 0.475 | 0.827 | 0.759 | 0.952 | 1.37 | -0.306 | 22.4 | 56.99 | 1059 | -- | -- |
| 235.1 | 0.714 | 3.8 | 0.546 | 0.828 | 0.922 | 0.812 | -- | -0.32 | 22.4 | 55 | 1058 | -- | -- |
| 236.78 | 0.717 | 3.8 | 0.451 | 0.821 | 0.784 | -- | 0.947 | -0.311 | 22.5 | 56.72 | 1065 | -- | -- |
| 237.56 | 0.718 | 3.79 | 0.515 | 0.821 | 0.91 | -- | -- | -0.318 | 22.6 | 55.66 | 1058 | -- | -- |
| 272.7 | 0.769 | 3.79 | 0.461 | -- | 0.704 | -- | 0.729 | -0.322 | -- | 56.17 | 1452 | -- | -- |
| 259.17 | 0.755 | 3.76 | 0.367 | 0.706 | -- | 0.695 | -- | -0.167 | 22 | -- | -- | -- | -- |
| 260.98 | 0.757 | 3.76 | 0.339 | 0.701 | -- | -- | -- | -0.17 | 22.2 | -- | -- | -- | -- |
| 273.28 | 0.77 | 3.77 | 0.496 | -- | 0.713 | -- | -- | -0.319 | -- | 56.03 | 1452 | -- | -- |
| 244.32 | 0.728 | 3.8 | -- | 0.815 | 0.797 | -- | -- | -0.359 | 22.6 | 56.82 | 1055 | -- | -- |
| 290.71 | 0.797 | 3.74 | 0.348 | -- | -- | -- | -- | -0.169 | -- | -- | -- | -- | -- |
| 264 | 0.76 | 3.77 | -- | 0.702 | -- | -- | -- | -0.207 | 22.2 | -- | -- | -- | -- |
| 278.83 | 0.778 | 3.78 | -- | -- | 0.57 | -- | -- | -0.342 | -- | 63 | 1486 | -- | -- |
| 293.92 | 0.8 | 3.75 | -- | -- | -- | -- | -- | -0.207 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 232.71 | humidity | 60 | 720 | > th | dose independent | rect. | 14 | 10 |
| 4 | 233.71 | humidity | 60 | 720 | > th | dose independent | rect. | 6 | 18 |
| 8 | 233.91 | humidity | 60 | 720 | > th | dose independent | rect. | 13 | 5 |
| 13 | 234.71 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 1 |
| 24 | 235.17 | humidity | 60 | 720 | > th | dose independent | rect. | 13 | 21 |
| 26 | 235.22 | humidity | 60 | 720 | > th | dose independent | rect. | 5 | 13 |
| 33 | 235.51 | humidity | 60 | 720 | > th | dose independent | sin | 17 | NA |
| 68 | 236.01 | humidity | 70 | 720 | < th | dose dependent | sin | 12 | NA |
| 70 | 236.04 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 6 |
| 83 | 236.24 | radiation | 20 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 91 | 236.55 | radiation | 30 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 102 | 236.63 | radiation | 30 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 106 | 236.73 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 17 |
| 110 | 236.79 | humidity | 50 | 1440 | < th | dose independent | sin | 11 | NA |
| 111 | 236.79 | humidity | 70 | 720 | < th | dose dependent | rect. | 15 | 5 |
| 134 | 237.07 | humidity | 50 | 720 | > th | dose dependent | rect. | 12 | 12 |
| 152 | 237.30 | humidity | 50 | 1440 | > th | dose independent | sin | 11 | NA |
| 172 | 237.37 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 176 | 237.40 | humidity | 60 | 720 | > th | dose independent | rect. | 22 | 20 |
| 185 | 237.51 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 15 |
| 187 | 237.53 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 20 |
| 192 | 237.54 | humidity | 70 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 208 | 237.58 | humidity | 70 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 224 | 237.63 | humidity | 60 | 1440 | < th | dose dependent | rect. | 13 | 21 |
| 231 | 237.66 | humidity | 50 | 720 | > th | dose dependent | rect. | 15 | 2 |
| 238 | 237.68 | wind | 3 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 292 | 237.83 | humidity | 60 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 298 | 237.88 | humidity | 60 | 720 | > th | dose independent | rect. | 9 | 9 |
| 308 | 237.92 | humidity | 50 | 1440 | < th | dose independent | rect. | 15 | 3 |
| 458 | 238.13 | wind | 9 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 472 | 238.19 | humidity | 50 | 720 | > th | dose dependent | rect. | 9 | 15 |
| 473 | 238.19 | humidity | 60 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 478 | 238.21 | humidity | 60 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 619 | 238.52 | humidity | 60 | 1440 | > th | dose independent | rect. | 24 | 19 |
| 659 | 238.58 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 726 | 238.66 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 22 |
| 730 | 238.67 | humidity | 60 | 1440 | < th | dose independent | rect. | 9 | 10 |
| 772 | 238.68 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 856 | 238.72 | humidity | 60 | 1440 | < th | dose dependent | no | NA | NA |