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Os06g0133200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.96 (0.0434) R2 : 0.95
β1 : -1.55 (0.16) R2dD : 0.0114 R2D : 0.00892
β2 : 7.96 (0.133) R2dC : 0.608 R2C : 0.85
β3 : -2.33 (0.113) R2dE : 0.0724 R2E : 0.328
β4 : 3.61 (0.43) R2dD*C : 0.007 R2D*C : 0.00269
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.612 (0.0938) R2dN8 : 0.00672 R2N8 : 0.00288
σ : 0.811
deviance : 303.06
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C
peak time of C : 9.29
E
wheather : temperature
threshold : 21.41
memory length : 104
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 18
open length of G : 9.75

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
303.38 0.818 9.96 -1.55 7.94 -2.33 3.58 0.326 -0.627 9.29 21.5 112 17.9 9.79
303.06 0.811 9.96 -1.55 7.96 -2.33 3.61 -- -0.612 9.29 21.41 104 18 9.75
345.41 0.866 9.97 -1.56 8.02 -2.29 -- -0.226 -0.64 9.27 21.4 115 17.9 9.72
345.01 0.865 9.96 -1.46 7.91 -2.35 -- -- -0.627 9.27 21.5 100 18 9.75
918.87 1.41 9.94 -0.237 -- -6.96 -- 0.659 0.595 -- 17.95 217 14.5 11.8
528.09 1.08 10 -1.8 9.53 -- 3.66 -- -0.931 9.68 -- -- -- --
578.63 1.13 9.99 -1.67 9.52 -- -- -- -0.926 9.67 -- -- -- --
551.37 1.09 10.2 -0.793 -- -8.25 -- -- -1.06 -- 14.5 372 13.2 11.1
400.41 0.932 9.93 -- 7.94 -2.33 -- -- -0.47 9.27 21.51 80 18.1 10
5950.11 3.6 10.3 -1.75 -- -- -- -- -0.91 -- -- -- -- --
651.9 1.19 9.95 -- 9.52 -- -- -- -0.74 9.68 -- -- -- --
592.59 1.13 10.2 -- -- -8.3 -- -- -0.808 -- 14.4 362 13.3 11.2
6030.83 3.62 10.2 -- -- -- -- -- -0.716 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 327.82 temperature 20.0 90 > th dose independent rect. 18 10
2 335.04 temperature 15.0 90 > th dose dependent rect. 18 10
4 348.05 temperature 20.0 10 > th dose independent rect. 19 10
10 357.85 temperature 15.0 10 > th dose dependent rect. 19 10
13 358.88 temperature 10.0 270 > th dose dependent rect. 16 10
14 359.48 temperature 20.0 270 > th dose independent rect. 16 10
23 370.19 temperature 20.0 90 > th dose independent rect. 7 21
32 374.68 temperature 30.0 90 < th dose dependent rect. 21 10
44 379.22 temperature 20.0 10 > th dose independent rect. 7 22
87 396.56 temperature 20.0 10 > th dose independent rect. 19 17
137 407.00 atmosphere 1010.0 90 < th dose independent rect. 18 10
139 407.09 radiation 1.0 30 > th dose independent rect. 12 19
238 419.73 temperature 15.0 90 > th dose dependent rect. 18 18
254 421.37 temperature 25.0 90 < th dose dependent sin 12 NA
262 422.02 temperature 25.0 270 < th dose independent rect. 19 11
289 423.34 temperature 25.0 270 < th dose dependent sin 14 NA
290 423.38 atmosphere 1015.0 10 < th dose independent rect. 7 22
295 423.97 atmosphere 1015.0 270 < th dose independent rect. 16 10
298 424.14 temperature 20.0 720 > th dose independent rect. 15 4
308 424.59 atmosphere 1015.0 90 < th dose independent rect. 7 21
321 425.16 radiation 1.0 10 > th dose independent rect. 12 21
339 426.22 radiation 10.0 270 < th dose independent rect. 20 11
353 427.04 atmosphere 1015.0 10 < th dose independent rect. 19 10
393 429.45 radiation 40.0 270 < th dose dependent rect. 20 11
420 430.89 precipitation 0.1 90 < th dose independent rect. 4 14
421 430.89 precipitation 0.1 90 < th dose dependent rect. 4 14
434 431.33 humidity 70.0 270 > th dose independent rect. 20 11
439 431.64 wind 9.0 270 < th dose independent rect. 20 11
455 432.17 temperature 10.0 270 > th dose independent rect. 20 11
457 432.17 humidity 50.0 270 > th dose independent rect. 20 11
459 432.17 atmosphere 995.0 270 > th dose independent rect. 20 11
461 432.17 temperature 10.0 270 > th dose independent rect. 7 13
462 432.17 atmosphere 1015.0 270 < th dose independent rect. 7 13
480 432.75 temperature 10.0 90 > th dose dependent sin 10 NA
489 432.95 precipitation 0.1 270 < th dose independent rect. 2 13
490 432.95 precipitation 0.1 270 < th dose dependent rect. 2 13
500 433.39 temperature 20.0 90 < th dose independent rect. 21 8
504 433.44 temperature 20.0 90 < th dose independent sin 13 NA
505 433.45 wind 9.0 270 < th dose independent rect. 7 13
514 433.76 radiation 1.0 90 < th dose dependent rect. 6 22
531 434.27 radiation 1.0 90 < th dose independent rect. 7 21
538 434.52 radiation 1.0 90 < th dose independent rect. 14 14
543 434.56 radiation 1.0 90 < th dose dependent rect. 14 14
552 434.83 radiation 40.0 270 < th dose independent rect. 15 11
575 435.28 temperature 10.0 270 > th dose independent rect. 2 13
576 435.28 atmosphere 1015.0 270 < th dose independent rect. 2 13
588 435.46 temperature 10.0 90 > th dose dependent rect. 4 14
595 435.61 temperature 25.0 720 > th dose independent rect. 16 1
597 435.65 radiation 1.0 90 < th dose independent rect. 17 11
612 435.99 humidity 50.0 90 > th dose independent rect. 18 10
613 435.99 radiation 20.0 90 < th dose independent rect. 18 10
616 435.99 temperature 10.0 90 > th dose independent rect. 4 14
617 435.99 atmosphere 1015.0 90 < th dose independent rect. 4 14
622 436.09 atmosphere 995.0 90 > th dose independent rect. 18 10
625 436.13 radiation 40.0 90 < th dose dependent rect. 18 10
626 436.15 temperature 20.0 10 < th dose independent sin 12 NA
630 436.20 wind 9.0 270 < th dose independent rect. 15 11
635 436.35 temperature 20.0 90 > th dose independent sin 13 NA
637 436.36 wind 9.0 90 < th dose independent rect. 18 10
642 436.41 wind 9.0 90 < th dose independent rect. 4 14
647 436.60 wind 9.0 270 < th dose independent rect. 2 13
668 437.23 temperature 20.0 10 < th dose independent rect. 20 10
679 437.66 precipitation 0.1 90 < th dose independent rect. 18 10
680 437.66 precipitation 0.1 90 < th dose dependent rect. 18 10
697 438.05 precipitation 0.1 270 < th dose independent rect. 7 13
698 438.05 precipitation 0.1 270 < th dose dependent rect. 7 13
705 438.28 temperature 30.0 720 < th dose dependent rect. 21 1
728 438.80 atmosphere 995.0 30 > th dose dependent rect. 12 19
741 439.10 temperature 10.0 270 > th dose dependent rect. 16 19
747 439.15 temperature 30.0 720 < th dose dependent rect. 19 3
751 439.23 atmosphere 995.0 270 > th dose independent rect. 2 13
752 439.26 precipitation 0.1 270 < th dose independent rect. 20 11
753 439.26 precipitation 0.1 270 < th dose dependent rect. 20 11
765 439.47 temperature 10.0 10 > th dose dependent rect. 5 14
800 440.06 precipitation 0.1 270 < th dose independent rect. 15 11
802 440.06 precipitation 0.1 270 < th dose dependent rect. 15 11
810 440.15 radiation 1.0 10 > th dose independent rect. 17 14
825 440.45 temperature 20.0 10 > th dose independent rect. 22 14
838 440.68 atmosphere 1015.0 90 < th dose dependent rect. 18 10
840 440.72 temperature 20.0 10 < th dose independent rect. 18 12
854 441.01 atmosphere 1015.0 10 < th dose independent rect. 19 17
856 441.12 temperature 10.0 720 > th dose dependent rect. 15 4
891 441.64 radiation 1.0 10 < th dose dependent rect. 18 23
897 441.70 wind 1.0 270 > th dose independent rect. 7 13
919 441.98 radiation 1.0 10 < th dose dependent rect. 18 11
929 442.12 wind 7.0 90 < th dose independent rect. 12 19
955 442.47 atmosphere 1015.0 10 < th dose dependent rect. 19 10
967 442.65 atmosphere 1015.0 90 < th dose independent rect. 18 18
997 443.02 humidity 50.0 90 > th dose independent rect. 7 21