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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0133100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.41 (0.0419) R2 : 0.918
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.43 (0.102) R2dC : 0.729 R2C : 0.787
β3 : -3.65 (0.136) R2dE : 0.132 R2E : 0.19
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0581 (0.088) R2dN8 : 8.55e-05 R2N8 : -0.00402
σ : 0.785
deviance : 284.03
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_____
C
peak time of C : 10.1
E
wheather : radiation
threshold : 0.9149
memory length : 71
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 20.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.8 0.779 5.42 -0.316 6.48 -3.78 -0.411 -2.44 -0.0976 10 0.6081 83 20.8 --
282.56 0.783 5.41 -0.268 6.4 -3.76 -0.452 -- -0.0644 10 0.8328 74 20.9 --
275.06 0.772 5.44 -0.279 6.42 -3.76 -- -2.4 -0.105 10 0.6279 80 20.8 --
281.85 0.782 5.42 -0.286 6.44 -3.66 -- -- -0.08 10.1 0.8694 71 20.8 --
583.41 1.12 5.59 -0.0603 -- -6.55 -- 0.201 -0.099 -- 31.85 2 6.79 --
537.49 1.09 5.4 -0.245 6.84 -- 0.0209 -- 0.0639 11.2 -- -- -- --
537.49 1.09 5.4 -0.244 6.84 -- -- -- 0.0639 11.2 -- -- -- --
537.04 1.08 5.56 -0.249 -- -6.81 -- -- 0.0544 -- 372.2 2 6.86 --
284.03 0.785 5.41 -- 6.43 -3.65 -- -- -0.0581 10.1 0.9149 71 20.8 --
3460.54 2.75 5.57 -0.408 -- -- -- -- 0.00479 -- -- -- -- --
539.06 1.09 5.4 -- 6.84 -- -- -- 0.0912 11.2 -- -- -- --
538.47 1.08 5.55 -- -- -6.81 -- -- 0.0816 -- 401.3 2 6.85 --
3464.94 2.75 5.56 -- -- -- -- -- 0.0501 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.52 radiation 40.0 90 < th dose independent rect. 15 14
2 275.01 precipitation 0.1 90 < th dose independent rect. 5 10
3 275.01 precipitation 0.1 90 < th dose dependent rect. 5 10
4 277.91 temperature 10.0 90 > th dose independent rect. 5 10
5 277.91 atmosphere 1015.0 90 < th dose independent rect. 5 10
6 277.91 temperature 10.0 90 > th dose independent rect. 15 14
7 279.33 wind 9.0 90 < th dose independent rect. 5 10
9 280.80 atmosphere 995.0 90 > th dose independent rect. 5 10
10 281.20 radiation 1.0 90 < th dose dependent sin 3 NA
11 285.51 radiation 1.0 90 > th dose independent rect. 4 11
21 286.03 wind 9.0 90 < th dose independent rect. 15 14
32 293.47 radiation 1.0 90 < th dose dependent rect. 1 17
35 295.44 radiation 1.0 90 < th dose dependent rect. 1 7
38 295.66 radiation 1.0 90 < th dose dependent rect. 1 10
41 296.05 radiation 1.0 90 < th dose independent rect. 1 6
45 296.15 precipitation 0.1 90 < th dose independent rect. 15 14
46 296.15 precipitation 0.1 90 < th dose dependent rect. 15 14
63 298.92 radiation 1.0 90 < th dose independent rect. 1 10
65 299.06 wind 9.0 270 < th dose independent rect. 4 20
73 300.26 radiation 1.0 30 < th dose independent sin 2 NA
81 301.23 temperature 15.0 270 > th dose independent rect. 24 4
82 301.24 atmosphere 1010.0 270 < th dose independent rect. 24 4
83 301.25 wind 9.0 270 < th dose independent rect. 24 4
85 301.25 temperature 30.0 270 < th dose independent rect. 24 4
86 301.25 humidity 50.0 270 > th dose independent rect. 24 4
89 301.25 atmosphere 995.0 270 > th dose independent rect. 24 4
95 301.25 temperature 10.0 270 > th dose independent rect. 4 20
103 301.40 radiation 1.0 90 < th dose independent rect. 1 16
106 301.74 radiation 1.0 30 > th dose independent sin 2 NA
107 302.56 radiation 10.0 10 < th dose dependent rect. 2 4
111 302.84 radiation 1.0 90 < th dose independent rect. 1 14
119 303.54 precipitation 0.1 270 < th dose independent rect. 24 4
120 303.54 precipitation 0.1 270 < th dose dependent rect. 24 4
130 304.77 humidity 50.0 270 > th dose dependent rect. 24 4
132 304.83 radiation 10.0 270 < th dose independent rect. 17 7
136 305.55 humidity 50.0 270 > th dose independent rect. 17 7
138 305.98 wind 9.0 270 < th dose independent rect. 17 7
139 306.18 radiation 30.0 270 < th dose dependent rect. 17 7
141 306.38 atmosphere 995.0 90 > th dose independent rect. 15 14
143 306.43 wind 9.0 270 < th dose dependent rect. 24 4
147 307.04 temperature 10.0 270 > th dose independent rect. 17 7
151 307.04 temperature 10.0 270 > th dose independent rect. 24 17
152 307.06 atmosphere 1015.0 270 < th dose independent rect. 24 17
154 307.23 humidity 50.0 90 > th dose independent rect. 5 10
156 307.48 atmosphere 995.0 270 > th dose independent rect. 17 7
158 307.52 humidity 80.0 90 > th dose independent rect. 2 3
163 308.15 wind 7.0 90 < th dose independent rect. 2 3
171 308.29 temperature 10.0 90 > th dose independent rect. 2 3
173 308.29 temperature 30.0 90 < th dose independent rect. 2 3
174 308.29 humidity 50.0 90 > th dose independent rect. 2 3
177 308.29 atmosphere 995.0 90 > th dose independent rect. 2 3
178 308.29 atmosphere 1010.0 90 < th dose independent rect. 2 3
184 308.51 precipitation 0.1 270 < th dose independent rect. 4 20
185 308.51 precipitation 0.1 270 < th dose dependent rect. 4 20
188 308.93 radiation 40.0 90 < th dose dependent rect. 15 14
191 309.14 precipitation 0.1 90 < th dose independent rect. 2 3
192 309.14 precipitation 0.1 90 < th dose dependent rect. 2 3
197 309.48 temperature 10.0 270 > th dose dependent rect. 24 4
213 310.90 atmosphere 995.0 270 > th dose independent rect. 4 20
219 311.55 wind 9.0 270 < th dose independent rect. 24 17
223 311.75 precipitation 0.1 270 < th dose independent rect. 24 17
224 311.75 precipitation 0.1 270 < th dose dependent rect. 24 17
230 312.79 radiation 10.0 10 < th dose dependent rect. 2 17
231 313.05 wind 9.0 90 < th dose dependent rect. 2 3
237 313.69 temperature 10.0 90 > th dose dependent rect. 2 3
267 314.91 precipitation 0.1 270 < th dose independent rect. 17 7
268 314.91 precipitation 0.1 270 < th dose dependent rect. 17 7
277 315.47 wind 1.0 270 > th dose independent rect. 24 4
286 316.43 wind 1.0 270 > th dose independent rect. 17 7
412 318.69 temperature 30.0 270 < th dose independent rect. 17 7
490 321.10 atmosphere 995.0 270 > th dose independent rect. 24 17
495 321.67 humidity 50.0 270 > th dose independent rect. 4 20
540 323.32 radiation 40.0 10 < th dose dependent rect. 14 16
570 324.82 atmosphere 1015.0 90 < th dose independent rect. 15 14
573 324.95 radiation 1.0 270 < th dose dependent rect. 23 11
595 325.45 atmosphere 995.0 90 > th dose dependent rect. 2 3
613 325.98 humidity 50.0 270 > th dose dependent rect. 23 6
624 326.35 radiation 1.0 270 < th dose dependent rect. 23 16
842 330.97 wind 1.0 90 > th dose independent rect. 3 2
908 332.81 atmosphere 995.0 270 > th dose dependent rect. 24 4
913 332.88 radiation 1.0 270 < th dose independent rect. 5 19
918 333.16 atmosphere 1015.0 90 < th dose dependent rect. 3 2
923 333.21 wind 1.0 270 > th dose independent rect. 1 2
946 333.69 atmosphere 1015.0 270 < th dose independent rect. 4 20
949 333.77 temperature 30.0 90 < th dose dependent rect. 3 2
978 335.22 wind 1.0 90 > th dose independent rect. 5 10