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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0131700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.82 (0.0361) R2 : 0.571
β1 : -2.65 (0.136) R2dD : 0.403 R2D : 0.276
β2 : 1.21 (0.0899) R2dC : 0.172 R2C : 0.16
β3 : 1.26 (0.111) R2dE : 0.139 R2E : 0.0108
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.193 (0.0794) R2dN8 : 0.00789 R2N8 : -0.0287
σ : 0.667
deviance : 204.96
__
_____
C
peak time of C : 8.38
E
wheather : temperature
threshold : 23
memory length : 1311
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
196.92 0.659 5.92 -3.48 1.2 1.5 -1.06 -2.9 -0.427 8.44 23.16 1351 -- --
202.08 0.662 5.82 -2.63 1.2 1.27 -0.989 -- -0.193 8.29 22.96 1324 -- --
200.38 0.659 5.92 -3.5 1.21 1.49 -- -2.84 -0.421 8.31 23.17 1357 -- --
204.96 0.667 5.82 -2.65 1.21 1.26 -- -- -0.193 8.38 23 1311 -- --
280.02 0.779 5.95 -3.44 -- 1.45 -- -2.64 -0.394 -- 23.16 1398 -- --
258.46 0.754 5.76 -2.19 1.21 -- -0.93 -- 0.0647 7.95 -- -- -- --
260.92 0.756 5.76 -2.22 1.21 -- -- -- 0.0645 7.82 -- -- -- --
284.33 0.785 5.85 -2.64 -- 1.21 -- -- -0.174 -- 23 1392 -- --
371.07 0.897 5.7 -- 1.21 0.643 -- -- 0.38 8.29 28.18 1271 -- --
340.24 0.862 5.79 -2.21 -- -- -- -- 0.0813 -- -- -- -- --
390.92 0.925 5.71 -- 1.19 -- -- -- 0.312 7.95 -- -- -- --
450.57 0.989 5.72 -- -- 0.588 -- -- 0.401 -- 28.4 1392 -- --
468.69 1.01 5.74 -- -- -- -- -- 0.326 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 192.09 humidity 70 14400 < th dose dependent rect. 18 1
2 192.43 wind 5 43200 > th dose dependent rect. 5 12
9 192.72 wind 5 43200 > th dose dependent sin 0 NA
11 192.75 wind 5 43200 > th dose dependent rect. 4 17
20 193.00 wind 5 43200 > th dose dependent rect. 24 21
30 193.16 humidity 70 14400 < th dose dependent rect. 18 14
31 193.16 wind 5 43200 > th dose dependent rect. 24 17
43 193.36 wind 7 43200 > th dose independent rect. 2 14
46 193.38 wind 5 43200 < th dose independent rect. 3 14
52 193.41 wind 5 43200 > th dose independent rect. 4 13
53 193.41 wind 7 43200 > th dose independent rect. 24 16
57 193.46 wind 7 43200 > th dose independent rect. 6 10
75 193.58 wind 7 43200 < th dose independent rect. 6 10
88 193.67 wind 7 43200 < th dose independent rect. 24 16
91 193.69 radiation 1 1440 < th dose dependent rect. 18 2
107 193.90 wind 7 43200 > th dose independent sin 2 NA
111 193.92 wind 7 43200 > th dose independent rect. 2 19
112 193.92 wind 7 43200 > th dose independent rect. 24 21
117 193.97 wind 7 43200 < th dose independent rect. 2 19
124 193.99 wind 7 43200 < th dose independent rect. 24 21
134 194.04 wind 7 43200 < th dose independent sin 2 NA
143 194.08 radiation 1 1440 < th dose dependent rect. 18 10
146 194.10 humidity 60 14400 < th dose independent rect. 17 2
163 194.17 wind 5 43200 > th dose dependent rect. 10 22
185 194.27 humidity 60 14400 < th dose independent rect. 17 15
201 194.36 wind 5 43200 > th dose dependent rect. 18 23
216 194.40 wind 7 43200 > th dose independent rect. 20 21
222 194.43 humidity 70 14400 < th dose dependent rect. 17 5
256 194.52 radiation 1 1440 < th dose dependent rect. 18 7
265 194.57 wind 5 43200 > th dose independent rect. 9 7
277 194.61 wind 5 43200 > th dose dependent no NA NA
282 194.62 wind 7 43200 < th dose independent rect. 20 21
296 194.67 humidity 60 14400 < th dose independent rect. 17 5
325 194.72 humidity 70 14400 < th dose independent rect. 19 13
373 194.88 wind 5 43200 > th dose dependent rect. 13 23
474 195.20 temperature 25 1440 > th dose dependent rect. 16 1
483 195.23 wind 7 43200 > th dose independent rect. 5 22
488 195.25 wind 7 43200 < th dose independent rect. 5 22
494 195.27 wind 7 43200 < th dose independent rect. 5 20
504 195.30 wind 7 43200 > th dose independent rect. 2 23
530 195.36 wind 7 43200 < th dose independent rect. 2 23
553 195.41 wind 7 43200 > th dose independent no NA NA
572 195.44 wind 5 43200 > th dose independent rect. 9 23
590 195.48 wind 7 43200 < th dose independent no NA NA
630 195.55 humidity 60 14400 > th dose independent rect. 17 15
633 195.55 wind 7 43200 < th dose independent rect. 10 23
637 195.56 humidity 60 14400 > th dose independent rect. 17 5
641 195.58 humidity 60 14400 > th dose independent rect. 17 2
647 195.59 humidity 60 14400 > th dose independent rect. 17 11
694 195.69 wind 7 43200 > th dose independent rect. 13 23
696 195.69 temperature 25 1440 > th dose dependent rect. 15 7
710 195.72 temperature 25 1440 > th dose dependent rect. 15 5
741 195.79 wind 7 43200 < th dose independent rect. 13 23
756 195.83 radiation 1 43200 < th dose dependent rect. 20 4
892 196.20 temperature 25 1440 > th dose dependent rect. 18 1
968 196.37 temperature 25 1440 > th dose dependent rect. 15 18