Os06g0131500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, family 17 protein.
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Os06g0131500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, family 17 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 160.08 | 0.594 | 4.01 | -0.413 | 0.559 | -1.52 | -0.039 | 1.27 | 0.293 | 10.6 | 11.72 | 342 | -- | -- |
| 161.21 | 0.591 | 4.04 | -0.606 | 0.565 | -1.47 | -0.0219 | -- | 0.234 | 10.5 | 8.51 | 340 | -- | -- |
| 160.09 | 0.589 | 4.01 | -0.415 | 0.558 | -1.51 | -- | 1.27 | 0.293 | 10.5 | 11.59 | 344 | -- | -- |
| 161.2 | 0.591 | 4.04 | -0.616 | 0.569 | -1.49 | -- | -- | 0.237 | 10.6 | 7.499 | 332 | -- | -- |
| 169.25 | 0.606 | 4.01 | -0.265 | -- | -1.74 | -- | 1.47 | 0.36 | -- | 14.9 | 627 | -- | -- |
| 184.89 | 0.637 | 4.08 | -0.941 | 0.762 | -- | 0.106 | -- | 0.0238 | 8.38 | -- | -- | -- | -- |
| 184.92 | 0.637 | 4.08 | -0.937 | 0.762 | -- | -- | -- | 0.0238 | 8.38 | -- | -- | -- | -- |
| 170.65 | 0.608 | 4.04 | -0.519 | -- | -1.73 | -- | -- | 0.289 | -- | 4.124 | 627 | -- | -- |
| 170.22 | 0.608 | 4.02 | -- | 0.668 | -1.8 | -- | -- | 0.335 | 11.2 | 14.21 | 245 | -- | -- |
| 217.2 | 0.689 | 4.1 | -0.933 | -- | -- | -- | -- | 0.0317 | -- | -- | -- | -- | -- |
| 208.08 | 0.675 | 4.05 | -- | 0.758 | -- | -- | -- | 0.128 | 8.47 | -- | -- | -- | -- |
| 177.09 | 0.62 | 4.02 | -- | -- | -1.92 | -- | -- | 0.37 | -- | 11.92 | 647 | -- | -- |
| 240.16 | 0.723 | 4.07 | -- | -- | -- | -- | -- | 0.135 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 157.80 | temperature | 15.0 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 2 | 158.16 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 22 |
| 9 | 159.09 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 13 | 159.40 | temperature | 15.0 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 20 | 159.51 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 3 | 4 |
| 22 | 159.59 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 9 |
| 59 | 159.83 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 60 | 159.83 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 14 | 23 |
| 71 | 159.88 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 86 | 159.93 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 22 |
| 122 | 160.03 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 8 |
| 124 | 160.03 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 130 | 160.06 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 2 |
| 133 | 160.06 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 20 | 19 |
| 142 | 160.09 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 175 | 160.16 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 207 | 160.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 226 | 160.27 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 231 | 160.28 | temperature | 10.0 | 270 | > th | dose dependent | no | NA | NA |
| 239 | 160.29 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 240 | 160.29 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 241 | 160.29 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 262 | 160.35 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 283 | 160.41 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 10 |
| 287 | 160.42 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 325 | 160.50 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 338 | 160.53 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 21 |
| 339 | 160.54 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 358 | 160.58 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 4 | 23 |
| 359 | 160.59 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 9 | NA |
| 374 | 160.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 3 | 16 |
| 388 | 160.67 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 11 | 2 |
| 389 | 160.67 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 416 | 160.73 | humidity | 90.0 | 43200 | > th | dose dependent | sin | 3 | NA |
| 422 | 160.74 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 432 | 160.76 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 447 | 160.79 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 459 | 160.81 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 10 | 3 |
| 483 | 160.85 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 484 | 160.85 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 2 |
| 485 | 160.85 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 8 | 2 |
| 486 | 160.85 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 2 |
| 490 | 160.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 491 | 160.86 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 507 | 160.89 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 508 | 160.89 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 519 | 160.90 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 529 | 160.92 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 566 | 160.97 | temperature | 30.0 | 270 | < th | dose dependent | no | NA | NA |
| 609 | 161.02 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 654 | 161.10 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 3 | 9 |
| 657 | 161.10 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 18 | 5 |
| 664 | 161.11 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 2 | 11 |
| 677 | 161.13 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 694 | 161.14 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 21 |
| 718 | 161.18 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 727 | 161.20 | temperature | 10.0 | 30 | > th | dose dependent | no | NA | NA |
| 746 | 161.22 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 2 | 16 |
| 761 | 161.23 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 21 | 22 |
| 776 | 161.25 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 15 | 22 |
| 894 | 161.37 | humidity | 90.0 | 43200 | > th | dose dependent | no | NA | NA |
| 914 | 161.39 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 23 |
| 964 | 161.45 | temperature | 25.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 979 | 161.45 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 23 |
| 986 | 161.46 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 11 | 23 |