Os06g0131300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Arginine decarboxylase (EC 4.1.1.19) (Fragment).
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Os06g0131300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Arginine decarboxylase (EC 4.1.1.19) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.81 | 0.537 | 13.6 | 0.795 | 2.64 | -1.6 | 1.02 | 1.61 | -0.12 | 8.41 | 22.3 | 1562 | -- | -- |
| 138.33 | 0.548 | 13.7 | 0.578 | 2.7 | -1.66 | 0.767 | -- | -0.314 | 8.31 | 21.8 | 1585 | -- | -- |
| 134.02 | 0.539 | 13.6 | 0.827 | 2.64 | -1.59 | -- | 1.62 | -0.122 | 8.37 | 22.3 | 1564 | -- | -- |
| 139.73 | 0.551 | 13.7 | 0.556 | 2.7 | -1.77 | -- | -- | -0.258 | 8.34 | 21.7 | 1548 | -- | -- |
| 466.93 | 1.01 | 13.7 | 0.89 | -- | -1.74 | -- | 1.77 | 0.0119 | -- | 22.2 | 763 | -- | -- |
| 233.38 | 0.716 | 13.8 | -0.327 | 2.64 | -- | 0.96 | -- | -0.794 | 8.46 | -- | -- | -- | -- |
| 236.27 | 0.72 | 13.8 | -0.299 | 2.64 | -- | -- | -- | -0.795 | 8.42 | -- | -- | -- | -- |
| 340.54 | 0.859 | 13.6 | 0.38 | -- | -2.38 | -- | -- | 0.177 | -- | 25.2 | 594 | -- | -- |
| 142.1 | 0.555 | 13.7 | -- | 2.67 | -1.61 | -- | -- | -0.298 | 8.33 | 21.9 | 1500 | -- | -- |
| 624.63 | 1.17 | 13.9 | -0.285 | -- | -- | -- | -- | -0.768 | -- | -- | -- | -- | -- |
| 238.62 | 0.723 | 13.8 | -- | 2.64 | -- | -- | -- | -0.761 | 8.43 | -- | -- | -- | -- |
| 344.06 | 0.864 | 13.7 | -- | -- | -2.33 | -- | -- | 0.0618 | -- | 25.28 | 619 | -- | -- |
| 626.77 | 1.17 | 13.9 | -- | -- | -- | -- | -- | -0.736 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 128.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 3 | 129.81 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 22 |
| 9 | 133.68 | temperature | 30 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 12 | 134.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 13 | 134.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 20 | 135.77 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 11 |
| 24 | 136.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 17 |
| 44 | 136.41 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 45 | 136.44 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 51 | 136.49 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 89 | 136.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 142 | 137.78 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 157 | 138.01 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 167 | 138.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 188 | 138.63 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 206 | 138.97 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 1 |
| 223 | 139.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 257 | 139.40 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 23 |
| 258 | 139.41 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 282 | 139.62 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 23 |
| 289 | 139.70 | temperature | 25 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 334 | 140.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 1 |
| 348 | 140.31 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 3 |
| 367 | 140.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 10 |
| 493 | 141.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 626 | 142.06 | temperature | 15 | 1440 | > th | dose dependent | sin | 10 | NA |
| 670 | 142.32 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 693 | 142.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 21 |
| 995 | 144.68 | temperature | 30 | 30 | < th | dose dependent | rect. | 23 | 23 |