Os06g0130600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : GAGA binding-like family protein.
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Os06g0130600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : GAGA binding-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.78 | 0.181 | 9.85 | 0.339 | 0.0857 | -0.265 | -0.0608 | -1.04 | 0.092 | 11.7 | 42.18 | 3675 | -- | -- |
| 15.82 | 0.185 | 9.85 | 0.406 | 0.102 | -0.22 | -0.0759 | -- | 0.11 | 11.9 | 40 | 3441 | -- | -- |
| 14.79 | 0.179 | 9.85 | 0.341 | 0.0871 | -0.262 | -- | -1.02 | 0.0914 | 11.9 | 42.14 | 3637 | -- | -- |
| 15.78 | 0.185 | 9.85 | 0.416 | 0.0778 | -0.233 | -- | -- | 0.124 | 11.8 | 40 | 2700 | -- | -- |
| 15.23 | 0.182 | 9.85 | 0.333 | -- | -0.315 | -- | -1.15 | 0.0904 | -- | 43.44 | 3718 | -- | -- |
| 16.93 | 0.193 | 9.86 | 0.407 | 0.109 | -- | -0.0272 | -- | 0.0896 | 11.7 | -- | -- | -- | -- |
| 16.93 | 0.193 | 9.86 | 0.406 | 0.109 | -- | -- | -- | 0.0895 | 11.7 | -- | -- | -- | -- |
| 16.19 | 0.187 | 9.85 | 0.404 | -- | -0.268 | -- | -- | 0.122 | -- | 39.94 | 2689 | -- | -- |
| 18.95 | 0.203 | 9.88 | -- | 0.0945 | -0.252 | -- | -- | 0.0237 | 12 | 59.25 | 29167 | -- | -- |
| 17.68 | 0.197 | 9.86 | 0.403 | -- | -- | -- | -- | 0.0882 | -- | -- | -- | -- | -- |
| 21.28 | 0.216 | 9.87 | -- | 0.105 | -- | -- | -- | 0.0443 | 11.5 | -- | -- | -- | -- |
| 19.33 | 0.205 | 9.89 | -- | -- | -0.28 | -- | -- | -0.00979 | -- | 59.76 | 40190 | -- | -- |
| 21.97 | 0.219 | 9.87 | -- | -- | -- | -- | -- | 0.0435 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.47 | wind | 3 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 14.54 | wind | 3 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 14 | 14.73 | wind | 1 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 19 | 14.74 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 10 |
| 21 | 14.75 | radiation | 20 | 4320 | < th | dose independent | sin | 10 | NA |
| 27 | 14.76 | radiation | 20 | 4320 | < th | dose dependent | rect. | 18 | 2 |
| 39 | 14.78 | radiation | 40 | 1440 | < th | dose independent | rect. | 7 | 2 |
| 40 | 14.78 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 18 |
| 42 | 14.78 | wind | 3 | 43200 | < th | dose dependent | rect. | 2 | 9 |
| 45 | 14.79 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 5 |
| 63 | 14.80 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 13 |
| 64 | 14.80 | radiation | 10 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 72 | 14.81 | radiation | 20 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 88 | 14.81 | radiation | 40 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 95 | 14.82 | radiation | 40 | 4320 | < th | dose independent | rect. | 15 | 19 |
| 97 | 14.82 | radiation | 40 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 104 | 14.83 | radiation | 40 | 1440 | < th | dose independent | rect. | 24 | 9 |
| 114 | 14.83 | radiation | 40 | 4320 | > th | dose dependent | rect. | 14 | 20 |
| 115 | 14.84 | radiation | 10 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 118 | 14.84 | radiation | 20 | 4320 | < th | dose independent | rect. | 6 | 3 |
| 139 | 14.84 | radiation | 10 | 4320 | > th | dose dependent | sin | 11 | NA |
| 140 | 14.84 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 191 | 14.85 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 4 |
| 200 | 14.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 2 |
| 212 | 14.86 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 11 |
| 218 | 14.86 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 261 | 14.87 | radiation | 1 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 268 | 14.87 | radiation | 40 | 4320 | > th | dose dependent | sin | 12 | NA |
| 280 | 14.87 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 15 |
| 281 | 14.87 | radiation | 10 | 4320 | > th | dose dependent | rect. | 17 | 17 |
| 283 | 14.87 | radiation | 40 | 4320 | > th | dose dependent | rect. | 13 | 22 |
| 284 | 14.88 | radiation | 40 | 4320 | < th | dose independent | sin | 12 | NA |
| 401 | 14.90 | wind | 3 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 404 | 14.90 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 429 | 14.91 | radiation | 40 | 4320 | > th | dose independent | rect. | 9 | 1 |
| 430 | 14.91 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 433 | 14.91 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 6 |
| 434 | 14.91 | humidity | 70 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 441 | 14.91 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 468 | 14.92 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 498 | 14.92 | radiation | 40 | 4320 | < th | dose dependent | sin | 10 | NA |
| 538 | 14.92 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 18 |
| 552 | 14.93 | wind | 1 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 611 | 14.93 | radiation | 40 | 4320 | < th | dose dependent | rect. | 17 | 15 |
| 696 | 14.95 | wind | 3 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 728 | 14.95 | wind | 7 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 737 | 14.95 | radiation | 40 | 4320 | < th | dose dependent | rect. | 1 | 7 |
| 759 | 14.96 | wind | 3 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 907 | 14.97 | radiation | 10 | 4320 | < th | dose independent | rect. | 13 | 21 |
| 965 | 14.98 | radiation | 20 | 4320 | > th | dose independent | sin | 10 | NA |