Os06g0130400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 1-aminocyclopropane-1-carboxylate synthase (EC 4.4.1.14) (Fragment).
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Os06g0130400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 1-aminocyclopropane-1-carboxylate synthase (EC 4.4.1.14) (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.68 | 0.296 | 14.5 | 0.319 | 0.391 | 0.521 | 0.095 | -0.239 | 0.322 | 1.44 | 16.83 | 1275 | -- | -- |
| 39.78 | 0.294 | 14.5 | 0.299 | 0.395 | 0.524 | 0.154 | -- | 0.316 | 1.36 | 17.06 | 1273 | -- | -- |
| 39.7 | 0.293 | 14.5 | 0.319 | 0.391 | 0.519 | -- | -0.276 | 0.322 | 1.54 | 16.85 | 1274 | -- | -- |
| 39.85 | 0.294 | 14.5 | 0.299 | 0.396 | 0.522 | -- | -- | 0.316 | 1.55 | 17.05 | 1275 | -- | -- |
| 42.19 | 0.303 | 14.5 | 0.313 | -- | 0.558 | -- | 0.0371 | 0.304 | -- | 16.86 | 1769 | -- | -- |
| 48.61 | 0.327 | 14.5 | 0.203 | 0.296 | -- | -0.198 | -- | 0.185 | 2.96 | -- | -- | -- | -- |
| 48.7 | 0.327 | 14.5 | 0.207 | 0.294 | -- | -- | -- | 0.186 | 2.6 | -- | -- | -- | -- |
| 42.04 | 0.302 | 14.5 | 0.289 | -- | 0.581 | -- | -- | 0.336 | -- | 16.86 | 1774 | -- | -- |
| 41.89 | 0.301 | 14.5 | -- | 0.368 | 0.494 | -- | -- | 0.288 | 1.66 | 18.61 | 1285 | -- | -- |
| 53.75 | 0.343 | 14.5 | 0.22 | -- | -- | -- | -- | 0.193 | -- | -- | -- | -- | -- |
| 49.83 | 0.33 | 14.5 | -- | 0.298 | -- | -- | -- | 0.163 | 2.61 | -- | -- | -- | -- |
| 43.9 | 0.309 | 14.4 | -- | -- | 0.601 | -- | -- | 0.337 | -- | 17.68 | 1796 | -- | -- |
| 55.02 | 0.346 | 14.5 | -- | -- | -- | -- | -- | 0.169 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.49 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 3 |
| 3 | 38.53 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 5 | 38.59 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 2 |
| 7 | 38.74 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 5 |
| 11 | 38.87 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 20 | 39.45 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 21 | 39.46 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 27 | 39.71 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 31 | 39.74 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 6 |
| 54 | 39.92 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 64 | 40.04 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 6 |
| 71 | 40.09 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 77 | 40.13 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 78 | 40.13 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 86 | 40.18 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 96 | 40.21 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 116 | 40.35 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 119 | 40.36 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 23 | 17 |
| 124 | 40.37 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 14 | 1 |
| 136 | 40.41 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 140 | 40.42 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 5 | 10 |
| 141 | 40.42 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 150 | 40.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 23 | 16 |
| 154 | 40.43 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 3 | 3 |
| 171 | 40.47 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 9 | 11 |
| 180 | 40.47 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 0 | NA |
| 187 | 40.48 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 192 | 40.49 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 12 |
| 216 | 40.51 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 21 |
| 226 | 40.53 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 238 | 40.55 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 240 | 40.55 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 279 | 40.61 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 9 |
| 280 | 40.61 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 13 |
| 297 | 40.62 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 299 | 40.62 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 14 | 1 |
| 310 | 40.65 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 314 | 40.66 | radiation | 10.0 | 1440 | < th | dose independent | sin | 20 | NA |
| 315 | 40.66 | wind | 9.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 352 | 40.68 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 1 | 5 |
| 357 | 40.69 | radiation | 20.0 | 1440 | < th | dose independent | sin | 23 | NA |
| 358 | 40.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 367 | 40.69 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 368 | 40.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 384 | 40.71 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 385 | 40.71 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 14 | 1 |
| 388 | 40.72 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 12 | 1 |
| 391 | 40.72 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 438 | 40.77 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 441 | 40.77 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 459 | 40.77 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 463 | 40.77 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 18 | 9 |
| 501 | 40.78 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 22 | 22 |
| 520 | 40.79 | radiation | 20.0 | 1440 | < th | dose dependent | no | NA | NA |
| 588 | 40.81 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 708 | 40.88 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 717 | 40.89 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 12 |
| 718 | 40.89 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 721 | 40.90 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 7 |
| 741 | 40.91 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 12 |
| 747 | 40.92 | radiation | 10.0 | 1440 | > th | dose independent | sin | 2 | NA |
| 757 | 40.92 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 12 |
| 759 | 40.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 797 | 40.94 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 809 | 40.95 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 14 | 23 |
| 822 | 40.96 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 16 | 1 |
| 855 | 40.97 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 870 | 40.98 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 876 | 40.99 | wind | 3.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 898 | 40.99 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 22 | 22 |
| 906 | 41.00 | radiation | 20.0 | 1440 | < th | dose independent | no | NA | NA |
| 1000 | 41.01 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |