Os06g0130200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0130200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119.21 | 0.513 | 5.75 | -1.18 | 0.576 | 0.919 | 0.461 | -0.637 | -0.018 | 13.1 | 28.14 | 931 | -- | -- |
| 119.36 | 0.509 | 5.77 | -1.3 | 0.586 | 0.892 | 0.406 | -- | -0.0557 | 13.3 | 28.16 | 904 | -- | -- |
| 119.91 | 0.51 | 5.76 | -1.21 | 0.584 | 0.951 | -- | -0.369 | -0.0292 | 13.5 | 28.17 | 904 | -- | -- |
| 119.97 | 0.51 | 5.77 | -1.28 | 0.587 | 0.923 | -- | -- | -0.0537 | 13.5 | 28.2 | 896 | -- | -- |
| 136.34 | 0.544 | 5.73 | -1.12 | -- | 1.15 | -- | -0.385 | 0.11 | -- | 26.5 | 979 | -- | -- |
| 138.16 | 0.551 | 5.79 | -1.53 | 0.767 | -- | 0.715 | -- | -0.172 | 11.9 | -- | -- | -- | -- |
| 140.33 | 0.555 | 5.79 | -1.5 | 0.764 | -- | -- | -- | -0.168 | 12 | -- | -- | -- | -- |
| 136.71 | 0.545 | 5.74 | -1.19 | -- | 1.12 | -- | -- | 0.0872 | -- | 26.5 | 968 | -- | -- |
| 160.48 | 0.59 | 5.72 | -- | 0.531 | 1.29 | -- | -- | 0.167 | 14.1 | 27.6 | 915 | -- | -- |
| 177.12 | 0.622 | 5.8 | -1.53 | -- | -- | -- | -- | -0.179 | -- | -- | -- | -- | -- |
| 199.92 | 0.661 | 5.75 | -- | 0.784 | -- | -- | -- | -0.000929 | 12.1 | -- | -- | -- | -- |
| 171.08 | 0.609 | 5.7 | -- | -- | 1.41 | -- | -- | 0.29 | -- | 26.46 | 992 | -- | -- |
| 238.66 | 0.721 | 5.76 | -- | -- | -- | -- | -- | -0.00957 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 113.28 | temperature | 20 | 720 | > th | dose dependent | rect. | 13 | 5 |
| 5 | 113.71 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 1 |
| 10 | 114.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 14 |
| 29 | 114.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 8 |
| 52 | 115.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 9 |
| 73 | 115.80 | temperature | 10 | 270 | > th | dose dependent | sin | 17 | NA |
| 91 | 115.93 | temperature | 25 | 720 | > th | dose independent | rect. | 14 | 5 |
| 126 | 116.25 | temperature | 25 | 720 | > th | dose independent | rect. | 15 | 3 |
| 140 | 116.50 | temperature | 10 | 720 | > th | dose dependent | sin | 20 | NA |
| 183 | 116.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 192 | 117.03 | temperature | 30 | 270 | < th | dose dependent | sin | 18 | NA |
| 222 | 117.26 | temperature | 30 | 720 | < th | dose dependent | sin | 21 | NA |
| 229 | 117.37 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 8 |
| 232 | 117.38 | humidity | 60 | 14400 | < th | dose dependent | rect. | 17 | 17 |
| 243 | 117.50 | humidity | 50 | 14400 | > th | dose independent | sin | 11 | NA |
| 244 | 117.53 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 250 | 117.56 | humidity | 50 | 14400 | < th | dose independent | sin | 12 | NA |
| 259 | 117.59 | temperature | 25 | 720 | < th | dose independent | rect. | 10 | 11 |
| 275 | 117.67 | humidity | 50 | 14400 | < th | dose dependent | sin | 11 | NA |
| 321 | 117.92 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 20 |
| 385 | 118.36 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 401 | 118.44 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 14 |
| 425 | 118.51 | humidity | 50 | 14400 | < th | dose dependent | rect. | 15 | 20 |
| 516 | 118.97 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 530 | 119.02 | temperature | 30 | 720 | < th | dose independent | rect. | 13 | 2 |
| 534 | 119.02 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 19 |
| 535 | 119.03 | radiation | 20 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 553 | 119.09 | humidity | 50 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 556 | 119.09 | humidity | 50 | 14400 | < th | dose dependent | rect. | 15 | 18 |
| 570 | 119.13 | humidity | 50 | 14400 | < th | dose dependent | rect. | 15 | 3 |
| 592 | 119.15 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 14 |
| 644 | 119.30 | temperature | 25 | 720 | < th | dose independent | sin | 21 | NA |
| 687 | 119.40 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 786 | 119.68 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 861 | 119.85 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 877 | 119.88 | humidity | 50 | 14400 | > th | dose independent | rect. | 17 | 18 |
| 946 | 120.04 | radiation | 20 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 953 | 120.06 | humidity | 60 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 969 | 120.09 | temperature | 25 | 720 | > th | dose dependent | no | NA | NA |