Os06g0129700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NUDIX hydrolase domain containing protein.
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Os06g0129700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NUDIX hydrolase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 90.02 | 0.446 | 7.88 | -0.784 | 0.655 | 1.24 | -0.562 | 0.143 | -0.539 | 4.19 | 11.88 | 303 | -- | -- |
| 90.03 | 0.442 | 7.89 | -0.806 | 0.657 | 1.25 | -0.596 | -- | -0.547 | 4.2 | 9.671 | 303 | -- | -- |
| 90.7 | 0.444 | 7.87 | -0.702 | 0.666 | 1.25 | -- | 0.678 | -0.516 | 4.04 | 9.074 | 276 | -- | -- |
| 91 | 0.444 | 7.89 | -0.805 | 0.657 | 1.27 | -- | -- | -0.545 | 4.13 | 8.923 | 298 | -- | -- |
| 99.19 | 0.464 | 7.91 | -0.862 | -- | 0.907 | -- | -0.528 | -0.544 | -- | 14.41 | 1110 | -- | -- |
| 106.5 | 0.484 | 7.85 | -0.544 | 0.317 | -- | -0.754 | -- | -0.368 | 3.79 | -- | -- | -- | -- |
| 108.04 | 0.487 | 7.85 | -0.533 | 0.313 | -- | -- | -- | -0.364 | 3.18 | -- | -- | -- | -- |
| 99.54 | 0.465 | 7.89 | -0.79 | -- | 0.917 | -- | -- | -0.513 | -- | 10.84 | 1077 | -- | -- |
| 104.42 | 0.476 | 7.85 | -- | 0.645 | 0.786 | -- | -- | -0.37 | 4.21 | 24.3 | 293 | -- | -- |
| 113.6 | 0.498 | 7.85 | -0.52 | -- | -- | -- | -- | -0.356 | -- | -- | -- | -- | -- |
| 115.53 | 0.503 | 7.84 | -- | 0.302 | -- | -- | -- | -0.304 | 3.17 | -- | -- | -- | -- |
| 113.99 | 0.497 | 7.86 | -- | -- | 0.599 | -- | -- | -0.38 | -- | 12.94 | 1024 | -- | -- |
| 120.72 | 0.513 | 7.84 | -- | -- | -- | -- | -- | -0.298 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.78 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 17 |
| 2 | 85.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 8 | 20 |
| 5 | 86.07 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 29 | 87.64 | temperature | 20 | 10 | > th | dose dependent | rect. | 10 | 19 |
| 69 | 88.91 | temperature | 10 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 70 | 88.95 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 82 | 89.21 | temperature | 15 | 270 | > th | dose dependent | rect. | 9 | 13 |
| 98 | 89.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 22 |
| 103 | 89.48 | temperature | 20 | 720 | > th | dose dependent | rect. | 10 | 1 |
| 142 | 90.08 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 158 | 90.22 | temperature | 20 | 30 | > th | dose dependent | rect. | 10 | 12 |
| 178 | 90.41 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 212 | 90.82 | temperature | 10 | 10 | > th | dose dependent | sin | 18 | NA |
| 225 | 90.93 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 21 |
| 251 | 91.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 267 | 91.15 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 23 |
| 296 | 91.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 23 |
| 298 | 91.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 18 |
| 301 | 91.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 319 | 91.38 | temperature | 15 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 350 | 91.49 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 377 | 91.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 419 | 91.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 435 | 91.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 436 | 91.73 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 560 | 92.12 | temperature | 30 | 270 | < th | dose dependent | rect. | 19 | 23 |
| 610 | 92.22 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 674 | 92.34 | temperature | 30 | 90 | < th | dose dependent | sin | 19 | NA |
| 744 | 92.44 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 6 |
| 774 | 92.48 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 797 | 92.52 | temperature | 30 | 10 | < th | dose dependent | rect. | 12 | 12 |
| 905 | 92.68 | temperature | 30 | 270 | < th | dose independent | rect. | 2 | 22 |
| 927 | 92.72 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 10 | 20 |
| 928 | 92.73 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 936 | 92.75 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 961 | 92.79 | temperature | 30 | 270 | < th | dose dependent | sin | 22 | NA |
| 966 | 92.80 | temperature | 30 | 720 | < th | dose independent | rect. | 4 | 13 |