Os06g0128800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0128800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 541.21 | 1.09 | 7.63 | 0.876 | 0.897 | 1.74 | 1.22 | -1.04 | 0.0368 | 22.1 | 67.44 | 10 | -- | -- |
| 544.61 | 1.09 | 7.64 | 0.859 | 0.908 | 1.8 | 1.06 | -- | 0.0302 | 21.8 | 66.66 | 9 | -- | -- |
| 545.43 | 1.09 | 7.63 | 0.841 | 0.891 | 1.71 | -- | -0.481 | 0.0329 | 22.2 | 68 | 9 | -- | -- |
| 545.69 | 1.09 | 7.64 | 0.785 | 0.928 | 1.62 | -- | -- | 0.0207 | 22.6 | 68 | 9 | -- | -- |
| 583.91 | 1.13 | 7.61 | 0.796 | -- | 2.11 | -- | -0.441 | 0.047 | -- | 66 | 4 | -- | -- |
| 605.98 | 1.15 | 7.67 | 0.799 | 1.95 | -- | 0.393 | -- | -0.131 | 0.87 | -- | -- | -- | -- |
| 606.62 | 1.15 | 7.67 | 0.784 | 1.95 | -- | -- | -- | -0.133 | 0.903 | -- | -- | -- | -- |
| 584.61 | 1.13 | 7.61 | 0.779 | -- | 2.1 | -- | -- | 0.0431 | -- | 66 | 5 | -- | -- |
| 561.92 | 1.1 | 7.65 | -- | 0.931 | 1.62 | -- | -- | -0.0712 | 22.7 | 67.94 | 9 | -- | -- |
| 844.3 | 1.36 | 7.64 | 0.856 | -- | -- | -- | -- | -0.0966 | -- | -- | -- | -- | -- |
| 622.82 | 1.17 | 7.69 | -- | 1.97 | -- | -- | -- | -0.221 | 0.92 | -- | -- | -- | -- |
| 600.61 | 1.15 | 7.63 | -- | -- | 2.11 | -- | -- | -0.0424 | -- | 66 | 5 | -- | -- |
| 863.64 | 1.37 | 7.66 | -- | -- | -- | -- | -- | -0.192 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 533.52 | humidity | 60 | 10 | > th | dose dependent | rect. | 12 | 20 |
| 2 | 533.80 | humidity | 60 | 30 | > th | dose dependent | rect. | 12 | 23 |
| 14 | 537.15 | humidity | 80 | 10 | > th | dose dependent | sin | 22 | NA |
| 21 | 537.92 | humidity | 80 | 10 | > th | dose independent | rect. | 12 | 8 |
| 34 | 538.92 | humidity | 80 | 30 | > th | dose independent | rect. | 1 | 19 |
| 39 | 539.24 | humidity | 80 | 10 | > th | dose dependent | rect. | 11 | 9 |
| 40 | 539.24 | humidity | 70 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 58 | 540.03 | humidity | 70 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 86 | 542.47 | radiation | 20 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 90 | 542.59 | humidity | 70 | 30 | > th | dose dependent | rect. | 1 | 19 |
| 91 | 542.63 | humidity | 70 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 93 | 542.68 | humidity | 70 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 95 | 542.71 | humidity | 70 | 10 | > th | dose dependent | no | NA | NA |
| 109 | 543.17 | humidity | 70 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 112 | 543.41 | humidity | 70 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 115 | 543.71 | humidity | 50 | 10 | > th | dose dependent | rect. | 12 | 8 |
| 124 | 544.22 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 153 | 545.76 | humidity | 80 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 167 | 546.18 | humidity | 70 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 178 | 546.70 | humidity | 80 | 10 | > th | dose independent | sin | 23 | NA |
| 179 | 546.70 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 22 |
| 184 | 546.81 | radiation | 20 | 270 | < th | dose dependent | rect. | 11 | 20 |
| 187 | 546.92 | radiation | 1 | 270 | < th | dose independent | rect. | 21 | 23 |
| 189 | 546.95 | temperature | 25 | 30 | < th | dose independent | rect. | 13 | 7 |
| 191 | 547.01 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 210 | 547.66 | humidity | 80 | 30 | > th | dose independent | rect. | 5 | 15 |
| 238 | 548.30 | humidity | 80 | 270 | > th | dose dependent | rect. | 12 | 2 |
| 242 | 548.37 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 258 | 548.69 | humidity | 80 | 30 | < th | dose independent | rect. | 7 | 13 |
| 269 | 548.97 | humidity | 80 | 30 | < th | dose independent | sin | 23 | NA |
| 272 | 548.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 7 |
| 295 | 549.38 | humidity | 90 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 309 | 549.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 19 |
| 310 | 549.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 21 |
| 333 | 550.18 | radiation | 10 | 90 | < th | dose dependent | rect. | 11 | 6 |
| 347 | 550.62 | humidity | 80 | 270 | > th | dose independent | rect. | 12 | 2 |
| 363 | 550.76 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 384 | 551.31 | radiation | 20 | 270 | < th | dose independent | rect. | 11 | 19 |
| 389 | 551.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 405 | 551.72 | humidity | 80 | 10 | > th | dose independent | rect. | 8 | 12 |
| 453 | 552.33 | humidity | 80 | 30 | < th | dose independent | rect. | 2 | 18 |
| 473 | 552.52 | humidity | 90 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 480 | 552.57 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 489 | 552.64 | humidity | 80 | 30 | < th | dose independent | rect. | 24 | 20 |
| 506 | 552.82 | radiation | 10 | 90 | < th | dose dependent | sin | 1 | NA |
| 518 | 552.87 | radiation | 10 | 90 | > th | dose independent | rect. | 16 | 23 |
| 540 | 553.15 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 553 | 553.28 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 557 | 553.30 | humidity | 70 | 30 | > th | dose dependent | rect. | 19 | 21 |
| 584 | 553.54 | humidity | 90 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 598 | 553.71 | humidity | 90 | 10 | < th | dose dependent | rect. | 2 | 19 |
| 611 | 553.82 | wind | 7 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 614 | 553.87 | humidity | 90 | 10 | < th | dose dependent | rect. | 16 | 23 |
| 651 | 554.12 | humidity | 80 | 30 | > th | dose independent | rect. | 21 | 23 |
| 665 | 554.27 | radiation | 10 | 720 | > th | dose independent | rect. | 11 | 6 |
| 683 | 554.42 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 695 | 554.59 | radiation | 10 | 720 | < th | dose dependent | rect. | 11 | 10 |
| 701 | 554.66 | humidity | 90 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 725 | 554.86 | humidity | 90 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 743 | 554.99 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 762 | 555.02 | wind | 9 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 765 | 555.07 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 2 |
| 766 | 555.07 | wind | 3 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 817 | 555.46 | radiation | 20 | 90 | < th | dose dependent | no | NA | NA |
| 839 | 555.59 | radiation | 10 | 720 | < th | dose dependent | rect. | 9 | 13 |
| 844 | 555.63 | humidity | 70 | 90 | > th | dose independent | rect. | 12 | 19 |
| 883 | 555.93 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 2 |
| 885 | 555.94 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 887 | 555.95 | humidity | 90 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 925 | 556.28 | humidity | 70 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 934 | 556.35 | wind | 3 | 14400 | < th | dose independent | rect. | 23 | 1 |
| 947 | 556.44 | wind | 3 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 972 | 556.63 | atmosphere | 995 | 43200 | < th | dose dependent | rect. | 14 | 19 |
| 984 | 556.74 | humidity | 50 | 270 | > th | dose independent | rect. | 11 | 9 |