Os06g0128500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Ribosomal protein L47, mitochondrial family protein.
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Os06g0128500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Ribosomal protein L47, mitochondrial family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 82.51 | 0.427 | 9.21 | 2.16 | 2.59 | 0.57 | 0.179 | -1.67 | 0.357 | 17.4 | 82.24 | 1317 | -- | -- |
| 85.15 | 0.43 | 9.21 | 2.02 | 2.6 | 0.505 | 0.0788 | -- | 0.337 | 17.4 | 83.11 | 1405 | -- | -- |
| 82.58 | 0.423 | 9.21 | 2.16 | 2.59 | 0.568 | -- | -1.65 | 0.358 | 17.4 | 82.32 | 1313 | -- | -- |
| 85.16 | 0.43 | 9.21 | 2.02 | 2.6 | 0.505 | -- | -- | 0.338 | 17.4 | 83.1 | 1407 | -- | -- |
| 370.74 | 0.902 | 9.18 | 1.98 | -- | -0.821 | -- | -0.196 | 0.254 | -- | 82.32 | 1313 | -- | -- |
| 88.7 | 0.442 | 9.22 | 2.05 | 2.62 | -- | 0.0929 | -- | 0.307 | 17.4 | -- | -- | -- | -- |
| 88.73 | 0.441 | 9.22 | 2.05 | 2.62 | -- | -- | -- | 0.308 | 17.4 | -- | -- | -- | -- |
| 368.39 | 0.898 | 9.17 | 1.91 | -- | -0.92 | -- | -- | 0.314 | -- | 71 | 1987 | -- | -- |
| 190.11 | 0.642 | 9.21 | -- | 2.64 | 0.762 | -- | -- | 0.371 | 17.4 | 86.87 | 3243 | -- | -- |
| 447.47 | 0.988 | 9.19 | 1.96 | -- | -- | -- | -- | 0.243 | -- | -- | -- | -- | -- |
| 199.02 | 0.66 | 9.27 | -- | 2.59 | -- | -- | -- | 0.08 | 17.4 | -- | -- | -- | -- |
| 323.47 | 0.838 | 9.25 | -- | -- | -1.86 | -- | -- | -0.0563 | -- | 75 | 382 | -- | -- |
| 548.49 | 1.09 | 9.23 | -- | -- | -- | -- | -- | 0.0259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 72.47 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 4 |
| 2 | 72.51 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 23 | 2 |
| 3 | 72.89 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 21 | 6 |
| 5 | 72.97 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 8 | 73.14 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 22 | 3 |
| 9 | 73.25 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 22 | 4 |
| 14 | 73.54 | atmosphere | 995.0 | 270 | > th | dose dependent | rect. | 22 | 4 |
| 15 | 73.59 | humidity | 60.0 | 270 | > th | dose dependent | rect. | 21 | 5 |
| 21 | 73.84 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 20 |
| 22 | 73.86 | temperature | 15.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 25 | 73.89 | temperature | 15.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 27 | 73.94 | temperature | 15.0 | 270 | > th | dose independent | rect. | 1 | 22 |
| 28 | 73.96 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 20 |
| 34 | 74.15 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 48 | 74.46 | temperature | 15.0 | 270 | > th | dose independent | rect. | 3 | 18 |
| 53 | 74.51 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 60 | 74.60 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 63 | 74.64 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 69 | 74.70 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 71 | 74.71 | atmosphere | 1000.0 | 10 | > th | dose dependent | rect. | 4 | 5 |
| 86 | 74.86 | wind | 7.0 | 270 | < th | dose independent | rect. | 8 | 18 |
| 102 | 75.11 | wind | 5.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 107 | 75.14 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 110 | 75.16 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 23 |
| 112 | 75.16 | wind | 9.0 | 270 | < th | dose dependent | rect. | 22 | 3 |
| 113 | 75.18 | radiation | 30.0 | 270 | < th | dose independent | rect. | 2 | 7 |
| 114 | 75.18 | wind | 7.0 | 270 | < th | dose independent | rect. | 7 | 20 |
| 116 | 75.20 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 119 | 75.22 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 19 |
| 120 | 75.22 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 19 |
| 124 | 75.27 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 2 | 7 |
| 138 | 75.42 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 21 | 5 |
| 140 | 75.42 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 141 | 75.44 | wind | 9.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 142 | 75.44 | temperature | 10.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 143 | 75.44 | temperature | 30.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 144 | 75.44 | humidity | 50.0 | 270 | > th | dose independent | rect. | 21 | 5 |
| 148 | 75.44 | radiation | 1.0 | 270 | < th | dose independent | rect. | 21 | 5 |
| 154 | 75.44 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 160 | 75.46 | wind | 9.0 | 270 | < th | dose dependent | rect. | 21 | 5 |
| 204 | 75.51 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 227 | 75.64 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 233 | 75.67 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 6 |
| 234 | 75.67 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 239 | 75.70 | wind | 9.0 | 270 | < th | dose independent | rect. | 22 | 15 |
| 241 | 75.71 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 265 | 75.75 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 266 | 75.75 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 268 | 75.75 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 286 | 75.84 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 17 | 14 |
| 287 | 75.84 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 17 | 14 |
| 293 | 75.87 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 296 | 75.89 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 297 | 75.89 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 10 |
| 299 | 75.89 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 302 | 75.90 | humidity | 50.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 310 | 75.92 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 10 |
| 312 | 75.92 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 10 |
| 313 | 75.93 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 316 | 75.94 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 4 |
| 318 | 75.94 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 325 | 75.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 327 | 75.98 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 328 | 75.98 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 331 | 75.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 332 | 75.98 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 334 | 75.98 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 352 | 75.98 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 353 | 75.98 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 4 |
| 365 | 76.02 | temperature | 10.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 366 | 76.02 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 368 | 76.02 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 372 | 76.03 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 4 | 5 |
| 375 | 76.03 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 4 | 5 |
| 381 | 76.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 384 | 76.05 | temperature | 30.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 386 | 76.05 | humidity | 50.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 391 | 76.05 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 4 | 5 |
| 393 | 76.05 | atmosphere | 1015.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 400 | 76.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 402 | 76.05 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 403 | 76.05 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 405 | 76.05 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 2 | 6 |
| 406 | 76.05 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 2 | 6 |
| 407 | 76.05 | temperature | 10.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 409 | 76.05 | temperature | 10.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 420 | 76.08 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 9 | 19 |
| 421 | 76.08 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 469 | 76.13 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 14 |
| 478 | 76.13 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 16 | 15 |
| 484 | 76.15 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 512 | 76.18 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 19 |
| 545 | 76.26 | wind | 9.0 | 10 | < th | dose dependent | rect. | 4 | 5 |
| 553 | 76.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 555 | 76.29 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 556 | 76.29 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 558 | 76.29 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 4 |
| 559 | 76.29 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 560 | 76.29 | radiation | 40.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 561 | 76.29 | wind | 1.0 | 270 | > th | dose independent | rect. | 13 | 9 |
| 563 | 76.29 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 581 | 76.34 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 597 | 76.34 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 606 | 76.35 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 8 | 18 |
| 608 | 76.35 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 617 | 76.38 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 10 |
| 648 | 76.45 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 4 | 19 |
| 651 | 76.45 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 654 | 76.46 | wind | 9.0 | 270 | < th | dose dependent | rect. | 2 | 6 |
| 664 | 76.47 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 668 | 76.48 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 15 |
| 669 | 76.48 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 9 | 19 |
| 670 | 76.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 9 |
| 673 | 76.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 705 | 76.54 | wind | 9.0 | 30 | < th | dose independent | rect. | 4 | 19 |
| 718 | 76.55 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 13 | 9 |
| 725 | 76.57 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 729 | 76.59 | wind | 9.0 | 270 | < th | dose dependent | rect. | 8 | 18 |
| 758 | 76.67 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 8 | 18 |
| 763 | 76.68 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 15 |
| 765 | 76.68 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 15 |
| 780 | 76.70 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 20 |
| 781 | 76.70 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 20 |
| 809 | 76.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 812 | 76.80 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 816 | 76.80 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 825 | 76.80 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 24 | 5 |
| 826 | 76.80 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 24 | 5 |
| 839 | 76.80 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 19 |
| 844 | 76.80 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 853 | 76.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 17 | 14 |
| 857 | 76.83 | humidity | 90.0 | 30 | > th | dose independent | rect. | 23 | 5 |
| 858 | 76.83 | wind | 9.0 | 270 | < th | dose independent | rect. | 13 | 9 |
| 896 | 76.87 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 946 | 76.98 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 20 |
| 956 | 77.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 959 | 77.01 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 5 |
| 960 | 77.01 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 5 |
| 961 | 77.01 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 10 | 19 |