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Os06g0128300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Mitochondrial half-ABC transporter.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.0118) R2 : 0.744
β1 : -1.17 (0.0431) R2dD : 0.43 R2D : 0.361
β2 : 0.712 (0.0298) R2dC : 0.324 R2C : 0.3
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.249 (0.0251) R2dN8 : 0.0738 R2N8 : -0.00804
σ : 0.221
deviance : 22.35
__
_____
C
peak time of C : 8.27
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
19.4 0.207 12.1 -0.446 0.687 -0.515 0.283 3.04 -0.122 8.22 26.4 3231 -- --
20.71 0.212 12.1 -1.01 0.707 -0.221 0.202 -- -0.158 8.18 24.65 24165 -- --
19.53 0.206 12.1 -0.351 0.687 -0.607 -- 3.75 -0.151 8.22 27.67 3176 -- --
20.86 0.213 12.1 -0.992 0.704 -0.236 -- -- -0.148 8.24 24.23 24091 -- --
41.79 0.301 12.1 -0.0531 -- -0.89 -- 4.85 -0.041 -- 26.79 2100 -- --
22.16 0.221 12.2 -1.18 0.712 -- 0.249 -- -0.249 8.3 -- -- -- --
22.35 0.221 12.2 -1.17 0.712 -- -- -- -0.249 8.27 -- -- -- --
36.41 0.281 12.2 -0.994 -- -0.731 -- -- -0.204 -- 25.07 618 -- --
25.13 0.233 12.1 -- 0.706 -0.929 -- -- 0.159 8.18 8.873 47520 -- --
50.43 0.332 12.2 -1.17 -- -- -- -- -0.241 -- -- -- -- --
58.44 0.358 12.1 -- 0.707 -- -- -- -0.118 8.39 -- -- -- --
52.56 0.338 12.1 -- -- -0.927 -- -- 0.169 -- 11.64 47520 -- --
86.24 0.433 12.2 -- -- -- -- -- -0.112 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 18.33 atmosphere 1010.0 270 < th dose independent rect. 17 7
3 18.52 atmosphere 1010.0 270 < th dose independent rect. 18 5
7 18.71 atmosphere 995.0 270 > th dose dependent rect. 22 8
10 18.79 temperature 15.0 270 > th dose dependent rect. 13 4
11 18.79 temperature 20.0 90 > th dose dependent rect. 14 6
12 18.80 temperature 20.0 10 > th dose dependent rect. 15 5
14 18.81 atmosphere 1015.0 270 < th dose dependent rect. 18 7
16 18.82 atmosphere 1015.0 270 < th dose dependent rect. 18 5
18 18.85 temperature 15.0 270 > th dose independent rect. 17 20
21 18.88 temperature 30.0 270 < th dose independent rect. 6 16
23 18.89 temperature 15.0 43200 < th dose dependent rect. 23 1
33 18.91 atmosphere 1015.0 10 < th dose dependent rect. 20 6
39 18.93 temperature 10.0 270 > th dose dependent rect. 11 7
47 18.97 temperature 25.0 4320 > th dose dependent rect. 23 10
68 19.02 temperature 30.0 270 < th dose independent rect. 17 20
72 19.03 wind 5.0 43200 < th dose independent rect. 12 2
82 19.05 atmosphere 1010.0 10 < th dose independent rect. 20 6
89 19.07 temperature 15.0 270 > th dose independent rect. 18 17
91 19.08 humidity 90.0 43200 < th dose independent rect. 16 12
92 19.08 humidity 90.0 43200 > th dose independent rect. 14 14
93 19.08 humidity 90.0 43200 < th dose independent rect. 14 14
106 19.09 wind 5.0 43200 > th dose independent rect. 12 1
108 19.09 humidity 90.0 43200 > th dose independent rect. 23 2
109 19.09 humidity 90.0 43200 > th dose independent rect. 16 12
128 19.11 temperature 15.0 43200 < th dose independent rect. 11 1
129 19.11 humidity 90.0 43200 < th dose independent rect. 23 2
130 19.11 humidity 90.0 43200 > th dose independent rect. 19 8
144 19.12 temperature 25.0 270 > th dose independent rect. 13 4
197 19.15 humidity 90.0 43200 > th dose dependent rect. 24 1
199 19.15 humidity 50.0 43200 < th dose dependent rect. 9 2
211 19.16 atmosphere 1015.0 270 < th dose independent rect. 17 20
220 19.17 humidity 90.0 43200 > th dose independent sin 14 NA
221 19.17 temperature 20.0 43200 < th dose independent rect. 14 1
235 19.17 atmosphere 1015.0 90 < th dose dependent rect. 20 17
236 19.18 temperature 20.0 43200 > th dose independent rect. 14 1
247 19.18 wind 5.0 43200 > th dose dependent rect. 13 1
248 19.18 humidity 90.0 43200 > th dose dependent rect. 23 4
254 19.18 humidity 50.0 43200 < th dose dependent rect. 3 8
263 19.19 humidity 90.0 43200 < th dose independent sin 14 NA
284 19.20 wind 7.0 270 < th dose independent rect. 13 4
289 19.20 wind 7.0 270 < th dose independent rect. 13 16
307 19.21 temperature 25.0 4320 > th dose independent rect. 1 8
322 19.21 radiation 1.0 14400 < th dose dependent rect. 21 8
328 19.21 humidity 90.0 43200 > th dose dependent rect. 14 14
410 19.25 temperature 15.0 43200 > th dose independent rect. 11 1
426 19.25 temperature 20.0 43200 < th dose dependent rect. 14 1
456 19.25 atmosphere 1015.0 270 < th dose dependent rect. 18 17
470 19.26 humidity 90.0 43200 > th dose dependent rect. 2 1
484 19.27 temperature 15.0 43200 > th dose independent rect. 9 1
506 19.27 radiation 1.0 14400 < th dose dependent rect. 24 5
521 19.27 atmosphere 1015.0 10 < th dose dependent rect. 20 17
528 19.28 temperature 15.0 43200 < th dose dependent sin 10 NA
545 19.29 radiation 20.0 43200 < th dose independent rect. 3 3
549 19.29 atmosphere 1015.0 270 < th dose independent rect. 18 17
552 19.29 humidity 90.0 43200 > th dose dependent sin 13 NA
570 19.30 temperature 15.0 43200 < th dose independent rect. 9 3
572 19.30 radiation 1.0 270 > th dose independent rect. 13 4
577 19.30 temperature 15.0 270 > th dose independent rect. 5 8
619 19.31 wind 1.0 4320 < th dose independent rect. 22 5
621 19.31 wind 1.0 4320 < th dose independent rect. 20 7
668 19.32 temperature 15.0 43200 > th dose independent rect. 9 3
671 19.32 temperature 30.0 270 > th dose independent rect. 11 6
721 19.33 wind 1.0 4320 > th dose independent rect. 22 5
784 19.34 temperature 25.0 10 > th dose dependent rect. 15 14
802 19.35 temperature 15.0 14400 < th dose independent rect. 24 1
804 19.35 temperature 15.0 43200 > th dose independent rect. 23 2
807 19.35 radiation 1.0 43200 < th dose independent rect. 9 2
814 19.35 temperature 25.0 4320 < th dose independent rect. 1 9
819 19.35 temperature 30.0 1440 < th dose independent rect. 21 18
821 19.35 temperature 30.0 1440 < th dose independent rect. 19 20
826 19.35 temperature 15.0 43200 < th dose dependent rect. 4 1
828 19.35 radiation 1.0 43200 < th dose dependent rect. 9 1
863 19.36 radiation 1.0 43200 > th dose independent rect. 9 2
867 19.36 temperature 30.0 270 < th dose independent rect. 5 8
871 19.36 temperature 25.0 4320 < th dose independent rect. 24 11
872 19.36 temperature 30.0 1440 < th dose independent rect. 1 14
875 19.36 precipitation 0.1 270 < th dose independent rect. 13 16
879 19.36 radiation 10.0 43200 < th dose dependent rect. 4 1
885 19.36 atmosphere 1015.0 270 < th dose dependent rect. 13 4
904 19.36 precipitation 0.1 270 < th dose dependent rect. 13 16
920 19.37 temperature 30.0 1440 > th dose independent rect. 12 3
930 19.37 temperature 30.0 1440 < th dose independent rect. 8 7
932 19.37 temperature 30.0 1440 < th dose independent rect. 6 9
934 19.37 temperature 30.0 1440 < th dose independent rect. 4 11
937 19.37 temperature 15.0 270 > th dose independent rect. 7 15
946 19.37 temperature 25.0 4320 > th dose dependent sin 8 NA
976 19.37 temperature 25.0 10 > th dose dependent rect. 15 16
977 19.37 radiation 40.0 14400 > th dose dependent rect. 15 17
993 19.38 radiation 1.0 270 > th dose independent sin 18 NA
996 19.38 radiation 20.0 43200 < th dose independent rect. 17 2