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Os06g0128100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF248, methyltransferase putative family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.73 (0.0338) R2 : 0.236
β1 : -1.38 (0.139) R2dD : 0.225 R2D : -0.0458
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.5 (0.146) R2dE : 0.247 R2E : -0.0463
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.496 (0.0765) R2dN8 : 0.11 R2N8 : -0.0429
σ : 0.621
deviance : 177.64
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_____
C
peak time of C : --
E
wheather : temperature
threshold : 10.15
memory length : 4238
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
168.31 0.61 5.8 -1.85 0.36 1.46 0.106 -2.27 -0.641 7.26 14.66 3387 -- --
172.57 0.612 5.72 -1.41 0.334 1.51 0.168 -- -0.493 7.6 9.582 4001 -- --
168.32 0.604 5.8 -1.83 0.359 1.46 -- -2.2 -0.632 7.23 12.4 3409 -- --
172.59 0.612 5.72 -1.37 0.32 1.49 -- -- -0.499 7.68 10.01 4059 -- --
174.29 0.615 5.8 -1.81 -- 1.41 -- -1.91 -0.614 -- 11.42 4153 -- --
212.86 0.684 5.66 -0.701 0.335 -- -0.00857 -- -0.207 6.38 -- -- -- --
212.86 0.683 5.66 -0.701 0.335 -- -- -- -0.207 6.39 -- -- -- --
177.64 0.621 5.73 -1.38 -- 1.5 -- -- -0.496 -- 10.15 4238 -- --
208.16 0.672 5.67 -- 0.313 0.875 -- -- -0.273 7.9 10.71 2648 -- --
218.69 0.691 5.66 -0.692 -- -- -- -- -0.2 -- -- -- -- --
225.81 0.703 5.64 -- 0.326 -- -- -- -0.129 6.51 -- -- -- --
213.02 0.68 5.68 -- -- 0.842 -- -- -0.261 -- 15.31 2760 -- --
231.32 0.71 5.65 -- -- -- -- -- -0.123 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 156.58 radiation 30.0 14400 > th dose independent rect. 7 1
17 159.48 radiation 30.0 14400 < th dose independent rect. 7 1
18 159.65 humidity 90.0 14400 > th dose dependent rect. 6 1
19 159.79 radiation 30.0 14400 < th dose independent rect. 20 12
25 159.90 radiation 30.0 14400 < th dose independent rect. 24 8
27 159.93 radiation 30.0 14400 < th dose independent rect. 2 6
33 160.45 radiation 30.0 14400 > th dose dependent rect. 16 16
34 160.58 radiation 30.0 14400 > th dose dependent rect. 7 1
50 160.68 radiation 1.0 14400 > th dose dependent rect. 18 1
62 161.17 radiation 10.0 14400 < th dose independent rect. 17 13
66 161.63 radiation 40.0 14400 < th dose dependent rect. 18 11
69 161.81 radiation 10.0 14400 < th dose independent rect. 17 8
71 161.83 radiation 10.0 14400 < th dose independent rect. 17 6
75 161.90 radiation 10.0 14400 < th dose independent rect. 17 2
77 161.95 humidity 90.0 14400 < th dose independent rect. 21 4
78 161.95 wind 9.0 43200 > th dose dependent rect. 18 2
81 162.04 humidity 80.0 14400 > th dose dependent rect. 22 2
83 162.20 radiation 40.0 14400 < th dose independent rect. 15 18
85 162.24 humidity 90.0 43200 < th dose independent rect. 6 8
87 162.40 humidity 90.0 43200 < th dose independent rect. 6 10
89 162.44 humidity 90.0 43200 < th dose independent rect. 6 6
92 162.47 humidity 90.0 43200 < th dose independent rect. 6 4
94 162.49 humidity 90.0 43200 > th dose independent rect. 6 8
97 162.56 wind 5.0 43200 > th dose dependent rect. 5 3
98 162.58 humidity 90.0 43200 > th dose independent rect. 6 10
99 162.59 wind 9.0 43200 > th dose independent rect. 18 2
104 162.64 wind 5.0 43200 > th dose dependent rect. 5 7
105 162.65 wind 7.0 43200 < th dose independent rect. 5 6
107 162.69 wind 7.0 43200 < th dose independent rect. 23 13
109 162.71 humidity 90.0 43200 > th dose independent rect. 8 6
120 162.77 wind 7.0 43200 > th dose independent rect. 23 13
127 162.81 wind 7.0 43200 > th dose independent rect. 5 6
135 162.86 wind 5.0 43200 > th dose dependent rect. 7 5
141 162.87 humidity 80.0 14400 > th dose dependent rect. 21 4
142 162.88 wind 7.0 43200 > th dose independent rect. 9 2
148 162.91 humidity 90.0 43200 > th dose independent rect. 6 1
153 162.95 wind 5.0 43200 > th dose dependent rect. 24 12
158 162.97 wind 7.0 43200 < th dose independent rect. 7 4
163 162.98 wind 5.0 43200 > th dose dependent rect. 9 2
164 162.99 wind 7.0 43200 > th dose independent rect. 7 4
188 163.09 wind 7.0 43200 < th dose independent rect. 2 10
214 163.21 humidity 90.0 43200 > th dose independent rect. 6 3
234 163.30 wind 9.0 43200 < th dose independent rect. 18 2
244 163.35 humidity 80.0 43200 > th dose dependent rect. 9 1
250 163.37 humidity 80.0 43200 > th dose dependent rect. 8 3
261 163.44 humidity 90.0 43200 > th dose independent rect. 8 1
270 163.50 wind 5.0 43200 < th dose independent rect. 5 2
303 163.68 humidity 90.0 43200 < th dose independent rect. 11 1
305 163.69 wind 5.0 43200 > th dose independent rect. 5 2
364 163.95 wind 5.0 43200 > th dose dependent sin 7 NA
374 163.98 wind 5.0 43200 > th dose dependent rect. 7 1
412 164.06 radiation 1.0 14400 > th dose independent rect. 18 12
417 164.08 wind 7.0 43200 > th dose independent sin 8 NA
435 164.15 wind 7.0 43200 < th dose independent sin 8 NA
463 164.27 radiation 1.0 14400 > th dose independent rect. 18 14
472 164.31 humidity 60.0 43200 > th dose independent rect. 15 9
492 164.38 humidity 90.0 14400 < th dose independent rect. 21 11
547 164.52 radiation 10.0 14400 < th dose dependent rect. 18 4
573 164.57 humidity 80.0 14400 > th dose dependent rect. 18 13
599 164.63 humidity 90.0 14400 < th dose independent rect. 14 17
644 164.72 humidity 70.0 43200 < th dose independent rect. 18 3
650 164.73 humidity 90.0 14400 < th dose independent sin 12 NA
668 164.77 humidity 90.0 14400 < th dose independent rect. 18 13
693 164.82 wind 1.0 43200 > th dose dependent rect. 3 1
695 164.82 wind 9.0 43200 < th dose dependent rect. 3 10
719 164.87 wind 9.0 43200 < th dose dependent rect. 7 5
734 164.90 wind 9.0 43200 < th dose dependent rect. 8 1
735 164.91 wind 5.0 43200 < th dose independent sin 5 NA
741 164.91 wind 5.0 43200 < th dose dependent rect. 3 1
751 164.94 humidity 60.0 43200 < th dose independent rect. 14 9
770 164.98 wind 5.0 43200 > th dose independent sin 5 NA
783 165.01 humidity 90.0 43200 < th dose independent sin 0 NA
788 165.02 radiation 20.0 14400 < th dose dependent rect. 20 9
789 165.03 radiation 1.0 14400 < th dose independent sin 10 NA
805 165.04 wind 9.0 43200 < th dose independent rect. 19 12
819 165.07 humidity 90.0 14400 < th dose independent rect. 14 14
836 165.10 wind 9.0 43200 > th dose independent rect. 19 11
864 165.15 wind 9.0 43200 < th dose dependent rect. 3 1
882 165.17 humidity 80.0 14400 > th dose dependent sin 12 NA
907 165.21 wind 3.0 43200 > th dose independent rect. 3 1
913 165.21 wind 9.0 43200 < th dose dependent rect. 24 13
949 165.28 radiation 1.0 14400 > th dose independent sin 10 NA
951 165.28 precipitation 0.1 43200 < th dose independent rect. 6 1
955 165.28 precipitation 0.1 43200 < th dose dependent rect. 6 1
957 165.29 temperature 20.0 43200 > th dose independent rect. 19 1