Os06g0127700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Oligopeptide transporter 7 (AtOPT7).
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Os06g0127700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Oligopeptide transporter 7 (AtOPT7).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 151.35 | 0.578 | 7.07 | -3.91 | 0.336 | 0.157 | 0.332 | -4.54 | -0.813 | 20.5 | 1.203 | 198 | -- | -- |
| 165.58 | 0.604 | 7.13 | -4.03 | 0.375 | -0.146 | -0.118 | -- | -0.832 | 20 | 1.203 | 198 | -- | -- |
| 151.69 | 0.574 | 7.07 | -3.92 | 0.336 | 0.15 | -- | -4.42 | -0.813 | 20.4 | 1.201 | 198 | -- | -- |
| 162.61 | 0.594 | 7.12 | -4.13 | 0.385 | -0.423 | -- | -- | -0.78 | 20.5 | 0.9308 | 1423 | -- | -- |
| 157.23 | 0.584 | 7.06 | -3.88 | -- | 0.378 | -- | -4.6 | -0.83 | -- | 1.288 | 196 | -- | -- |
| 166.36 | 0.605 | 7.13 | -4 | 0.346 | -- | 0.0357 | -- | -0.843 | 20.8 | -- | -- | -- | -- |
| 166.36 | 0.604 | 7.13 | -4 | 0.346 | -- | -- | -- | -0.843 | 20.7 | -- | -- | -- | -- |
| 169.88 | 0.607 | 7.11 | -4.11 | -- | -0.391 | -- | -- | -0.781 | -- | 0.9 | 1378 | -- | -- |
| 329.78 | 0.846 | 7.1 | -- | 0.845 | 2.28 | -- | -- | -0.18 | 22.1 | 7.419 | 46478 | -- | -- |
| 173.16 | 0.615 | 7.12 | -4 | -- | -- | -- | -- | -0.845 | -- | -- | -- | -- | -- |
| 588.07 | 1.13 | 7.03 | -- | 0.366 | -- | -- | -- | -0.397 | 19.9 | -- | -- | -- | -- |
| 292.45 | 0.796 | 6.93 | -- | -- | 3.22 | -- | -- | -0.0051 | -- | 7.2 | 33422 | -- | -- |
| 595.35 | 1.14 | 7.02 | -- | -- | -- | -- | -- | -0.402 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 144.41 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 20 | 9 |
| 3 | 144.47 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 22 | 1 |
| 6 | 144.50 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 10 | 5 |
| 14 | 144.59 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 23 | 144.65 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 9 |
| 26 | 144.69 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 11 |
| 27 | 144.69 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 19 | 16 |
| 40 | 144.76 | atmosphere | 995 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 61 | 144.79 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 88 | 144.88 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 10 | NA |
| 120 | 144.95 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 135 | 145.00 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 9 | NA |
| 155 | 145.03 | atmosphere | 995 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 248 | 145.17 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 275 | 145.27 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 24 | 6 |
| 304 | 145.31 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 305 | 145.31 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 320 | 145.35 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 330 | 145.39 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 384 | 145.52 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 9 | 1 |
| 392 | 145.54 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 17 |
| 453 | 145.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 5 |
| 541 | 145.80 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 546 | 145.80 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 8 | 23 |
| 548 | 145.81 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 578 | 145.86 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 23 |
| 669 | 146.02 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 11 | 10 |
| 677 | 146.03 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 5 |
| 679 | 146.03 | atmosphere | 995 | 14400 | > th | dose independent | rect. | 8 | 13 |
| 683 | 146.04 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 10 |
| 699 | 146.06 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 8 |
| 706 | 146.07 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 725 | 146.09 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 730 | 146.09 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 746 | 146.13 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 24 | 23 |
| 757 | 146.15 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 3 | 23 |
| 790 | 146.19 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 10 |
| 798 | 146.21 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 805 | 146.22 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 818 | 146.24 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 5 |
| 877 | 146.35 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 10 |
| 886 | 146.37 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 5 |