Os06g0127500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to MEG5.
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Os06g0127500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to MEG5.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.77 | 0.335 | 10.7 | -0.147 | 0.759 | -0.662 | 0.107 | 0.588 | -0.199 | 7.48 | 61.79 | 9 | -- | -- |
| 51.78 | 0.335 | 10.7 | -0.127 | 0.76 | -0.653 | 0.0422 | -- | -0.194 | 7.46 | 61.59 | 5 | -- | -- |
| 50.78 | 0.334 | 10.7 | -0.142 | 0.753 | -0.661 | -- | 0.561 | -0.201 | 7.45 | 61.95 | 8 | -- | -- |
| 51.75 | 0.335 | 10.7 | -0.123 | 0.759 | -0.648 | -- | -- | -0.194 | 7.47 | 61.81 | 4 | -- | -- |
| 80.56 | 0.42 | 10.7 | -0.135 | -- | -0.568 | -- | 0.621 | -0.185 | -- | 61.95 | 8 | -- | -- |
| 60.28 | 0.364 | 10.7 | -0.123 | 0.792 | -- | -0.0859 | -- | -0.157 | 9.85 | -- | -- | -- | -- |
| 60.3 | 0.364 | 10.7 | -0.126 | 0.793 | -- | -- | -- | -0.157 | 9.84 | -- | -- | -- | -- |
| 81.81 | 0.423 | 10.7 | -0.115 | -- | -0.552 | -- | -- | -0.181 | -- | 61.95 | 8 | -- | -- |
| 52.15 | 0.336 | 10.7 | -- | 0.757 | -0.647 | -- | -- | -0.181 | 7.47 | 61.93 | 4 | -- | -- |
| 97.87 | 0.462 | 10.7 | -0.135 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 60.73 | 0.365 | 10.7 | -- | 0.793 | -- | -- | -- | -0.143 | 9.85 | -- | -- | -- | -- |
| 82.16 | 0.424 | 10.7 | -- | -- | -0.554 | -- | -- | -0.168 | -- | 61.95 | 8 | -- | -- |
| 98.35 | 0.463 | 10.7 | -- | -- | -- | -- | -- | -0.142 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 48.37 | humidity | 60 | 10 | > th | dose dependent | sin | 2 | NA |
| 23 | 49.61 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 29 | 49.75 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 16 |
| 37 | 49.90 | humidity | 90 | 10 | < th | dose dependent | sin | 3 | NA |
| 59 | 50.31 | humidity | 80 | 10 | > th | dose dependent | rect. | 6 | 9 |
| 63 | 50.35 | radiation | 10 | 270 | > th | dose independent | sin | 10 | NA |
| 81 | 50.68 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 15 |
| 83 | 50.69 | humidity | 60 | 10 | > th | dose dependent | rect. | 9 | 23 |
| 85 | 50.70 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 87 | 50.72 | humidity | 90 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 90 | 50.75 | humidity | 90 | 10 | > th | dose independent | sin | 0 | NA |
| 104 | 50.87 | humidity | 60 | 10 | > th | dose dependent | rect. | 24 | 17 |
| 106 | 50.88 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 9 |
| 111 | 50.91 | humidity | 60 | 10 | > th | dose dependent | no | NA | NA |
| 116 | 50.97 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 12 |
| 117 | 50.99 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 23 |
| 122 | 51.01 | humidity | 90 | 10 | < th | dose dependent | rect. | 4 | 19 |
| 129 | 51.04 | humidity | 90 | 10 | < th | dose independent | sin | 0 | NA |
| 132 | 51.07 | humidity | 90 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 152 | 51.17 | humidity | 60 | 10 | > th | dose dependent | rect. | 5 | 12 |
| 155 | 51.17 | humidity | 60 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 162 | 51.20 | humidity | 80 | 90 | < th | dose independent | rect. | 7 | 4 |
| 165 | 51.21 | radiation | 20 | 30 | > th | dose independent | sin | 6 | NA |
| 168 | 51.21 | humidity | 60 | 10 | > th | dose dependent | rect. | 22 | 23 |
| 188 | 51.30 | humidity | 70 | 90 | > th | dose dependent | rect. | 23 | 20 |
| 194 | 51.32 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 22 |
| 204 | 51.36 | humidity | 80 | 90 | > th | dose independent | rect. | 23 | 16 |
| 231 | 51.43 | radiation | 10 | 270 | > th | dose independent | rect. | 17 | 17 |
| 263 | 51.51 | humidity | 90 | 90 | < th | dose dependent | rect. | 7 | 4 |
| 264 | 51.51 | humidity | 90 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 270 | 51.52 | humidity | 50 | 10 | > th | dose dependent | rect. | 11 | 21 |
| 285 | 51.57 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 4 |
| 303 | 51.57 | humidity | 60 | 30 | > th | dose dependent | rect. | 5 | 23 |
| 308 | 51.58 | humidity | 70 | 10 | > th | dose dependent | rect. | 22 | 17 |
| 317 | 51.60 | humidity | 80 | 30 | < th | dose independent | rect. | 7 | 9 |
| 349 | 51.68 | humidity | 90 | 10 | < th | dose dependent | no | NA | NA |
| 351 | 51.68 | humidity | 90 | 90 | < th | dose dependent | rect. | 3 | 8 |
| 357 | 51.69 | humidity | 80 | 90 | < th | dose independent | rect. | 2 | 9 |
| 360 | 51.69 | humidity | 90 | 10 | < th | dose dependent | rect. | 19 | 21 |
| 366 | 51.70 | humidity | 60 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 373 | 51.73 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 7 |
| 377 | 51.74 | humidity | 80 | 90 | > th | dose dependent | rect. | 11 | 4 |
| 387 | 51.76 | humidity | 60 | 10 | > th | dose dependent | rect. | 22 | 19 |
| 389 | 51.76 | humidity | 60 | 10 | > th | dose dependent | rect. | 18 | 23 |
| 455 | 51.85 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 15 |
| 467 | 51.88 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 10 |
| 471 | 51.88 | humidity | 90 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 472 | 51.89 | radiation | 20 | 30 | > th | dose independent | rect. | 15 | 21 |
| 486 | 51.91 | humidity | 60 | 10 | > th | dose dependent | rect. | 2 | 13 |
| 519 | 51.94 | humidity | 80 | 30 | < th | dose independent | rect. | 7 | 7 |
| 596 | 52.05 | radiation | 20 | 270 | < th | dose dependent | rect. | 22 | 16 |
| 676 | 52.17 | radiation | 20 | 30 | > th | dose independent | rect. | 13 | 23 |
| 724 | 52.26 | radiation | 20 | 30 | > th | dose independent | rect. | 7 | 7 |
| 832 | 52.37 | radiation | 30 | 90 | < th | dose dependent | sin | 5 | NA |