Os06g0127300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase.
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Os06g0127300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.94 | 0.204 | 13.2 | 0.822 | 0.153 | 0.327 | -0.369 | -0.632 | 0.311 | 6.65 | 19.66 | 1347 | -- | -- |
| 19.91 | 0.208 | 13.2 | 0.816 | 0.154 | 0.323 | -0.327 | -- | 0.309 | 6.71 | 19.5 | 1349 | -- | -- |
| 19.02 | 0.203 | 13.2 | 0.818 | 0.138 | 0.345 | -- | -0.654 | 0.317 | 5.23 | 19.5 | 1272 | -- | -- |
| 20.11 | 0.209 | 13.2 | 0.764 | 0.138 | 0.328 | -- | -- | 0.291 | 5.2 | 19.66 | 1274 | -- | -- |
| 19.75 | 0.207 | 13.2 | 0.818 | -- | 0.329 | -- | -0.596 | 0.306 | -- | 19.5 | 1070 | -- | -- |
| 23.28 | 0.226 | 13.2 | 0.744 | 0.161 | -- | -0.441 | -- | 0.223 | 7.57 | -- | -- | -- | -- |
| 23.81 | 0.228 | 13.2 | 0.733 | 0.163 | -- | -- | -- | 0.223 | 7.2 | -- | -- | -- | -- |
| 20.66 | 0.212 | 13.2 | 0.771 | -- | 0.332 | -- | -- | 0.282 | -- | 19.51 | 1058 | -- | -- |
| 32.33 | 0.265 | 13.2 | -- | 0.147 | 0.353 | -- | -- | 0.302 | 5.14 | 20 | 25806 | -- | -- |
| 25.21 | 0.235 | 13.2 | 0.736 | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
| 37.96 | 0.288 | 13.3 | -- | 0.171 | -- | -- | -- | 0.141 | 6.92 | -- | -- | -- | -- |
| 26.35 | 0.239 | 13.3 | -- | -- | 0.534 | -- | -- | 0.125 | -- | 49.83 | 31267 | -- | -- |
| 39.49 | 0.293 | 13.3 | -- | -- | -- | -- | -- | 0.144 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.00 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 2 | 19.00 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 4 | 19.15 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 5 | 19.19 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 22 |
| 10 | 19.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 11 | 19.22 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 16 |
| 19 | 19.23 | radiation | 20 | 1440 | < th | dose independent | sin | 23 | NA |
| 41 | 19.24 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 43 | 19.25 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 45 | 19.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 58 | 19.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 101 | 19.25 | radiation | 20 | 1440 | < th | dose independent | rect. | 24 | 23 |
| 123 | 19.26 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 137 | 19.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 13 | 23 |
| 161 | 19.30 | radiation | 20 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 168 | 19.31 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 194 | 19.33 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 199 | 19.34 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 207 | 19.34 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 12 |
| 225 | 19.35 | radiation | 10 | 1440 | < th | dose independent | sin | 17 | NA |
| 249 | 19.36 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 17 |
| 279 | 19.43 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 12 |
| 284 | 19.44 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 6 |
| 286 | 19.44 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 10 |
| 326 | 19.48 | radiation | 10 | 1440 | < th | dose independent | rect. | 14 | 3 |
| 385 | 19.58 | radiation | 40 | 1440 | < th | dose dependent | rect. | 9 | 4 |
| 470 | 19.74 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 484 | 19.76 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 607 | 19.83 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 611 | 19.84 | radiation | 30 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 615 | 19.84 | radiation | 30 | 1440 | < th | dose dependent | sin | 0 | NA |
| 621 | 19.84 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 622 | 19.84 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 660 | 19.85 | radiation | 10 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 661 | 19.85 | radiation | 30 | 1440 | < th | dose dependent | rect. | 9 | 23 |
| 712 | 19.86 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 21 |
| 719 | 19.86 | radiation | 1 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 746 | 19.87 | radiation | 1 | 1440 | > th | dose dependent | rect. | 9 | 23 |
| 755 | 19.88 | radiation | 1 | 1440 | > th | dose dependent | sin | 0 | NA |
| 769 | 19.88 | radiation | 30 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 777 | 19.88 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 853 | 19.89 | radiation | 40 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 923 | 19.90 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 23 |