Os06g0127200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nuclear protein SET domain containing protein.
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Os06g0127200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nuclear protein SET domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 104.82 | 0.481 | 7.53 | 0.258 | 0.518 | -2.25 | -0.756 | 2.79 | -0.0438 | 20.6 | 29.73 | 130 | -- | -- |
| 112.1 | 0.493 | 7.48 | 0.715 | 0.398 | -2.25 | -0.87 | -- | 0.0309 | 18.9 | 27.96 | 252 | -- | -- |
| 105.42 | 0.478 | 7.53 | 0.31 | 0.438 | -2.14 | -- | 2.66 | -0.0532 | 19.6 | 29.21 | 214 | -- | -- |
| 113.83 | 0.497 | 7.48 | 0.731 | 0.409 | -2.23 | -- | -- | 0.0425 | 19.4 | 28.06 | 235 | -- | -- |
| 111.37 | 0.492 | 7.53 | 0.19 | -- | -2.45 | -- | 2.83 | -0.118 | -- | 29.47 | 293 | -- | -- |
| 182.06 | 0.633 | 7.37 | 1.31 | 0.959 | -- | -0.714 | -- | 0.531 | 17.4 | -- | -- | -- | -- |
| 183.32 | 0.634 | 7.37 | 1.32 | 0.955 | -- | -- | -- | 0.528 | 17.4 | -- | -- | -- | -- |
| 120.01 | 0.51 | 7.48 | 0.677 | -- | -2.48 | -- | -- | -0.004 | -- | 28.75 | 296 | -- | -- |
| 126.53 | 0.524 | 7.51 | -- | 0.346 | -2.55 | -- | -- | -0.0909 | 20.1 | 28.01 | 244 | -- | -- |
| 230.8 | 0.71 | 7.36 | 1.28 | -- | -- | -- | -- | 0.505 | -- | -- | -- | -- | -- |
| 229.02 | 0.708 | 7.41 | -- | 0.933 | -- | -- | -- | 0.382 | 17.4 | -- | -- | -- | -- |
| 131 | 0.533 | 7.5 | -- | -- | -2.72 | -- | -- | -0.13 | -- | 28.42 | 314 | -- | -- |
| 274.32 | 0.773 | 7.39 | -- | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.50 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 5 | 103.53 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 9 | 104.99 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 13 | 105.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 23 |
| 15 | 105.78 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 16 | 105.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 19 |
| 46 | 106.79 | temperature | 10 | 270 | > th | dose dependent | sin | 6 | NA |
| 57 | 107.35 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 63 | 107.57 | temperature | 30 | 270 | < th | dose dependent | sin | 6 | NA |
| 81 | 108.01 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 84 | 108.13 | temperature | 30 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 98 | 108.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 8 |
| 103 | 108.44 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 10 |
| 104 | 108.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 13 |
| 145 | 108.96 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 17 |
| 155 | 109.06 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 175 | 109.30 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 209 | 109.61 | temperature | 25 | 1440 | < th | dose dependent | sin | 8 | NA |
| 250 | 110.17 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 264 | 110.26 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 3 |
| 291 | 110.52 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 23 |
| 311 | 110.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 314 | 110.72 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 325 | 110.86 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 5 |
| 388 | 111.27 | temperature | 25 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 420 | 111.45 | temperature | 20 | 4320 | < th | dose dependent | rect. | 4 | 1 |
| 440 | 111.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 4 |
| 500 | 112.00 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 16 |
| 509 | 112.02 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 526 | 112.14 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 4 |
| 543 | 112.26 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 574 | 112.43 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 577 | 112.44 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 592 | 112.55 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 596 | 112.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 9 |
| 604 | 112.62 | temperature | 20 | 1440 | < th | dose independent | rect. | 1 | 9 |
| 616 | 112.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 5 |
| 637 | 112.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 7 |
| 658 | 112.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 13 |
| 666 | 112.91 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 703 | 113.01 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 716 | 113.06 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 730 | 113.11 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 9 |
| 799 | 113.29 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 18 |
| 832 | 113.38 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 840 | 113.40 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |