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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0126200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.04 (0.0491) R2 : 0.274
β1 : 0.178 (0.18) R2dD : 0.00189 R2D : 0.00314
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.52 (0.384) R2dE : 0.156 R2E : 0.213
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : 7.83 (1.4) R2dD*E : 0.0555 R2D*E : 0.119
γ1 : 0.111 (0.107) R2dN8 : 0.00176 R2N8 : -0.00498
σ : 0.916
deviance : 386.51
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 90.62
memory length : 1481
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 2.83
open length of G : 0.816

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
379.78 0.916 3.05 0.197 0.348 3.45 0.219 7.32 0.104 15.6 90.5 1473 2.83 0.867
401.48 0.933 3.05 0.193 0.378 3.85 -0.161 -- 0.146 16.2 90.25 1430 3.04 0.667
379.77 0.908 3.05 0.208 0.356 3.64 -- 7.61 0.111 15.6 90.55 1482 2.82 0.841
401.57 0.933 3.05 0.212 0.38 3.89 -- -- 0.145 16 90.21 1434 3.05 0.667
386.51 0.916 3.04 0.178 -- 3.52 -- 7.83 0.111 -- 90.62 1481 2.83 0.816
524.78 1.07 3.09 0.316 0.285 -- 0.00702 -- -0.0491 14.3 -- -- -- --
524.78 1.07 3.09 0.316 0.285 -- -- -- -0.0491 14.3 -- -- -- --
409.33 0.942 3.05 0.2 -- 3.81 -- -- 0.135 -- 90.3 1432 3.05 0.667
402.71 0.935 3.06 -- 0.378 3.93 -- -- 0.116 16 90.1 1421 3.07 0.667
529.61 1.08 3.09 0.304 -- -- -- -- -0.056 -- -- -- -- --
527.41 1.07 3.1 -- 0.279 -- -- -- -0.0843 14.3 -- -- -- --
408.61 0.941 3.06 -- -- 3.89 -- -- 0.0851 -- 90.38 1382 3.28 0.417
532.05 1.08 3.1 -- -- -- -- -- -0.0898 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 387.73 humidity 90 1440 < th dose dependent rect. 3 1
2 394.93 humidity 90 1440 < th dose dependent rect. 23 8
3 395.13 wind 7 4320 < th dose independent rect. 18 3
4 395.13 wind 7 4320 < th dose independent rect. 18 5
8 395.96 humidity 90 1440 < th dose dependent rect. 2 5
13 398.44 wind 7 4320 > th dose independent rect. 18 3
18 399.27 wind 5 4320 > th dose dependent rect. 19 4
27 400.89 wind 7 4320 < th dose independent rect. 18 9
31 401.04 wind 9 4320 > th dose dependent rect. 20 4
50 401.36 wind 9 4320 > th dose independent rect. 18 8
56 401.75 humidity 90 1440 < th dose dependent rect. 23 5
109 404.23 humidity 80 1440 < th dose independent rect. 22 1
147 406.22 wind 7 1440 > th dose independent rect. 8 1
161 407.47 humidity 90 1440 < th dose dependent rect. 5 1
163 407.78 atmosphere 995 14400 > th dose independent rect. 16 1
167 408.19 wind 7 1440 < th dose independent rect. 8 1
177 409.39 humidity 70 1440 > th dose dependent rect. 1 6
192 410.85 atmosphere 995 14400 < th dose independent rect. 16 3
200 410.87 atmosphere 995 14400 < th dose dependent rect. 16 1
227 411.79 humidity 70 1440 > th dose dependent rect. 3 1
235 412.39 temperature 20 720 < th dose independent rect. 18 1
248 413.12 humidity 70 1440 > th dose dependent rect. 5 1
263 414.06 humidity 90 1440 < th dose independent rect. 5 1
270 414.40 atmosphere 995 14400 > th dose independent rect. 10 9
344 415.16 humidity 90 1440 < th dose dependent rect. 24 1
348 415.26 humidity 90 1440 < th dose independent rect. 2 1
370 415.90 temperature 20 720 < th dose independent rect. 9 11
462 417.29 humidity 90 1440 < th dose independent rect. 1 5
465 417.70 wind 5 1440 > th dose dependent rect. 8 1
472 418.17 humidity 80 1440 > th dose independent rect. 22 1
509 419.30 temperature 20 1440 > th dose independent rect. 18 1
521 419.61 humidity 90 1440 > th dose independent rect. 5 1
573 421.73 humidity 80 1440 < th dose dependent rect. 21 3
647 423.94 atmosphere 995 14400 < th dose dependent rect. 4 12
653 424.06 atmosphere 995 14400 < th dose independent rect. 4 11
698 425.00 atmosphere 995 14400 < th dose independent rect. 1 15
702 425.04 radiation 20 1440 > th dose independent rect. 6 1
729 425.24 atmosphere 995 14400 > th dose independent rect. 2 13
734 425.33 humidity 80 270 < th dose dependent rect. 21 10
739 425.45 atmosphere 995 14400 > th dose independent rect. 24 16
741 425.48 atmosphere 995 14400 > th dose independent rect. 22 18
745 425.53 atmosphere 995 14400 > th dose independent rect. 19 21
752 425.68 humidity 80 1440 < th dose independent rect. 21 10
753 425.75 humidity 80 270 < th dose independent rect. 21 10
797 426.80 atmosphere 995 14400 > th dose independent sin 22 NA
801 426.90 atmosphere 995 14400 < th dose independent sin 22 NA
803 426.92 atmosphere 995 14400 > th dose independent sin 4 NA
808 427.00 atmosphere 995 14400 < th dose dependent sin 1 NA
818 427.29 humidity 80 10 < th dose independent rect. 20 11
838 427.47 atmosphere 995 14400 < th dose independent sin 4 NA
877 427.94 radiation 1 14400 < th dose dependent rect. 23 1