FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0126100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0145) R2 : 0.0382
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.13 (0.0306) R2dN8 : 0.0493 R2N8 : 0.0382
σ : 0.273
deviance : 34.33
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.32 0.271 2.92 0.1 0.0741 0.197 0.176 0.532 0.102 11.8 6.522 4963 -- --
33.55 0.27 2.91 0.0711 0.0826 0.147 0.179 -- 0.095 11.6 2.612 4996 -- --
33.39 0.269 2.92 0.109 0.0775 0.178 -- 0.535 0.0938 12 9.038 4930 -- --
33.61 0.27 2.91 0.0778 0.0932 0.138 -- -- 0.11 12.5 3.01 5018 -- --
33.68 0.27 2.93 0.123 -- 0.199 -- 0.61 0.0879 -- 9 4911 -- --
33.79 0.273 2.9 0.0285 0.0812 -- 0.159 -- 0.134 12.7 -- -- -- --
33.89 0.273 2.9 0.0348 0.0823 -- -- -- 0.135 13.3 -- -- -- --
33.36 0.269 2.93 0.0334 -- 0.157 -- -- 0.0346 -- 10.86 4920 -- --
33.75 0.271 2.9 -- 0.0711 0.0976 -- -- 0.123 12.8 5.833 4980 -- --
34.3 0.274 2.9 0.0315 -- -- -- -- 0.134 -- -- -- -- --
33.92 0.272 2.9 -- 0.0817 -- -- -- 0.131 13.3 -- -- -- --
33.36 0.269 2.93 -- -- 0.186 -- -- 0.0115 -- 10.97 4905 -- --
34.33 0.273 2.91 -- -- -- -- -- 0.13 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.44 humidity 70.0 30 < th dose independent rect. 10 1
2 30.45 wind 1.0 30 < th dose independent rect. 10 1
3 30.45 temperature 10.0 1440 > th dose independent rect. 11 1
7 30.45 atmosphere 995.0 1440 > th dose independent rect. 11 1
10 30.45 precipitation 0.1 1440 < th dose independent rect. 11 1
11 30.45 temperature 10.0 1440 > th dose independent rect. 12 23
14 30.45 wind 1.0 30 < th dose dependent rect. 10 1
15 30.45 precipitation 0.1 1440 < th dose dependent rect. 11 1
16 30.47 atmosphere 1005.0 30 > th dose dependent rect. 10 1
17 30.48 atmosphere 1005.0 30 > th dose independent rect. 10 1
18 30.48 temperature 25.0 30 > th dose dependent rect. 10 1
21 30.50 humidity 70.0 30 < th dose dependent rect. 10 1
30 30.54 temperature 25.0 30 > th dose independent rect. 10 1
31 30.55 wind 5.0 30 < th dose independent rect. 10 1
34 30.55 temperature 10.0 30 > th dose independent rect. 10 1
36 30.55 temperature 30.0 30 < th dose independent rect. 10 1
37 30.55 humidity 50.0 30 > th dose independent rect. 10 1
40 30.55 atmosphere 1010.0 30 < th dose independent rect. 10 1
42 30.55 radiation 1.0 30 > th dose independent rect. 10 1
43 30.55 precipitation 0.1 30 < th dose independent rect. 10 1
44 30.55 temperature 10.0 30 > th dose independent rect. 11 23
45 30.55 precipitation 0.1 30 < th dose dependent rect. 10 1
46 30.56 wind 1.0 30 > th dose independent rect. 10 1
51 30.57 wind 7.0 30 < th dose dependent rect. 10 1
54 30.57 radiation 1.0 30 > th dose dependent rect. 10 1
55 30.58 radiation 40.0 30 < th dose independent rect. 10 1
59 30.60 wind 1.0 30 > th dose dependent rect. 10 1
61 30.62 radiation 40.0 30 < th dose dependent rect. 10 1
66 30.71 humidity 50.0 30 > th dose dependent rect. 10 1
69 30.72 atmosphere 1015.0 30 < th dose dependent rect. 10 1
70 30.73 wind 9.0 30 < th dose independent rect. 11 23
82 30.87 atmosphere 995.0 30 > th dose independent rect. 11 23
118 31.08 precipitation 0.1 30 < th dose independent rect. 11 23
120 31.08 precipitation 0.1 30 < th dose dependent rect. 11 23
134 31.78 humidity 50.0 30 > th dose independent rect. 11 23
136 31.85 temperature 30.0 30 < th dose independent rect. 11 23
139 31.91 temperature 25.0 90 > th dose dependent rect. 19 16
141 32.02 temperature 30.0 30 < th dose dependent rect. 10 1
180 32.22 radiation 10.0 1440 < th dose dependent rect. 21 1
182 32.23 temperature 10.0 1440 > th dose independent rect. 21 1
185 32.23 temperature 30.0 1440 < th dose independent rect. 21 1
190 32.23 humidity 50.0 1440 > th dose independent rect. 21 1
198 32.23 atmosphere 995.0 1440 > th dose independent rect. 21 1
199 32.23 radiation 1.0 1440 < th dose independent rect. 21 1
219 32.23 temperature 10.0 1440 > th dose independent rect. 22 23
228 32.25 temperature 25.0 30 > th dose independent rect. 20 1
230 32.25 atmosphere 1005.0 30 > th dose dependent rect. 20 1
233 32.26 wind 3.0 30 > th dose independent rect. 20 1
234 32.26 humidity 80.0 30 > th dose independent rect. 20 1
235 32.26 atmosphere 1005.0 30 > th dose independent rect. 20 1
236 32.26 atmosphere 995.0 30 > th dose dependent rect. 20 1
238 32.27 wind 5.0 30 < th dose independent rect. 20 1
241 32.27 humidity 90.0 30 < th dose independent rect. 20 1
243 32.27 wind 1.0 30 > th dose dependent rect. 20 1
244 32.27 temperature 10.0 30 > th dose dependent rect. 20 1
252 32.28 temperature 10.0 30 > th dose independent rect. 20 1
255 32.28 temperature 30.0 30 < th dose independent rect. 20 1
256 32.28 humidity 50.0 30 > th dose independent rect. 20 1
260 32.28 atmosphere 1010.0 30 < th dose independent rect. 20 1
262 32.28 radiation 1.0 30 < th dose independent rect. 20 1
267 32.28 precipitation 0.1 30 < th dose independent rect. 20 1
268 32.28 temperature 10.0 30 > th dose independent rect. 21 23
269 32.28 wind 9.0 30 < th dose dependent rect. 20 1
271 32.28 humidity 50.0 30 > th dose dependent rect. 20 1
274 32.28 radiation 1.0 30 < th dose dependent rect. 20 1
281 32.28 precipitation 0.1 30 < th dose dependent rect. 20 1
282 32.28 temperature 10.0 30 > th dose dependent rect. 11 23
286 32.30 wind 9.0 1440 < th dose independent rect. 21 1
287 32.30 atmosphere 1010.0 30 < th dose independent rect. 11 9
291 32.31 humidity 90.0 30 < th dose dependent rect. 20 1
297 32.32 wind 9.0 30 < th dose independent rect. 21 23
299 32.32 temperature 30.0 30 < th dose dependent rect. 20 1
300 32.32 atmosphere 1015.0 30 < th dose dependent rect. 20 1
309 32.35 temperature 10.0 90 > th dose dependent rect. 23 10
310 32.36 humidity 90.0 1440 < th dose independent rect. 11 1
314 32.36 temperature 15.0 10 > th dose dependent rect. 20 4
323 32.37 temperature 25.0 30 > th dose dependent rect. 20 4
349 32.41 temperature 20.0 30 > th dose dependent rect. 24 9
390 32.44 wind 7.0 30 < th dose independent rect. 11 9
399 32.45 temperature 25.0 30 > th dose independent rect. 20 4
413 32.47 atmosphere 1015.0 30 < th dose independent rect. 11 23
416 32.47 temperature 10.0 30 > th dose dependent rect. 11 9
422 32.49 temperature 15.0 90 > th dose independent rect. 11 9
456 32.53 wind 7.0 30 < th dose independent rect. 20 15
459 32.53 atmosphere 1005.0 10 > th dose dependent rect. 20 3
467 32.54 temperature 10.0 1440 > th dose independent rect. 12 9
470 32.54 temperature 10.0 1440 > th dose independent rect. 21 15
473 32.54 atmosphere 995.0 1440 > th dose independent rect. 21 15
479 32.54 atmosphere 995.0 90 > th dose dependent rect. 23 10
485 32.55 radiation 1.0 90 > th dose independent rect. 11 22
497 32.57 temperature 30.0 30 < th dose independent rect. 20 15
498 32.57 humidity 60.0 30 > th dose independent rect. 20 15
503 32.58 precipitation 0.1 30 < th dose independent rect. 21 23
505 32.58 precipitation 0.1 30 < th dose dependent rect. 21 23
509 32.59 temperature 10.0 30 > th dose independent rect. 20 15
511 32.59 atmosphere 995.0 30 > th dose independent rect. 20 15
522 32.61 precipitation 0.1 90 < th dose independent rect. 23 10
523 32.61 atmosphere 1015.0 90 < th dose independent rect. 9 14
526 32.61 precipitation 0.1 90 < th dose dependent rect. 23 10
529 32.62 precipitation 0.1 30 < th dose independent rect. 11 9
530 32.62 wind 9.0 90 < th dose independent rect. 23 10
531 32.62 temperature 10.0 90 > th dose independent rect. 23 10
532 32.62 humidity 50.0 90 > th dose independent rect. 23 10
533 32.62 atmosphere 995.0 90 > th dose independent rect. 23 10
534 32.62 temperature 10.0 90 > th dose independent rect. 9 14
537 32.62 atmosphere 1015.0 30 < th dose independent rect. 20 15
538 32.62 precipitation 0.1 30 < th dose independent rect. 20 15
542 32.62 precipitation 0.1 30 < th dose dependent rect. 11 9
543 32.62 precipitation 0.1 30 < th dose dependent rect. 20 15
551 32.63 atmosphere 995.0 30 > th dose independent rect. 11 9
566 32.64 wind 1.0 90 > th dose independent rect. 11 9
568 32.64 radiation 40.0 90 < th dose independent rect. 23 10
573 32.64 atmosphere 1000.0 10 > th dose dependent rect. 24 9
580 32.65 precipitation 0.1 90 < th dose independent rect. 9 14
586 32.65 atmosphere 995.0 30 > th dose independent rect. 21 23
596 32.65 precipitation 0.1 90 < th dose dependent rect. 9 14
600 32.66 temperature 30.0 90 < th dose independent rect. 23 10
612 32.67 wind 1.0 90 > th dose independent rect. 9 14
642 32.68 wind 9.0 90 < th dose dependent rect. 23 10
643 32.69 radiation 1.0 1440 > th dose independent rect. 11 1
651 32.69 temperature 10.0 10 > th dose dependent rect. 24 20
680 32.72 radiation 40.0 10 < th dose independent rect. 20 16
691 32.73 humidity 90.0 10 < th dose independent rect. 20 3
707 32.74 wind 5.0 30 < th dose independent rect. 20 3
712 32.74 temperature 25.0 90 > th dose independent rect. 24 9
721 32.74 temperature 10.0 30 > th dose dependent rect. 20 15
729 32.75 wind 7.0 10 < th dose independent rect. 24 20
730 32.75 temperature 20.0 10 > th dose independent rect. 24 20
731 32.75 wind 1.0 30 > th dose independent rect. 11 23
737 32.76 humidity 60.0 270 > th dose independent rect. 6 5
740 32.76 wind 9.0 90 < th dose independent rect. 9 14
758 32.77 temperature 25.0 10 > th dose independent rect. 24 9
767 32.78 atmosphere 1010.0 10 < th dose independent rect. 20 4
777 32.78 temperature 10.0 10 > th dose dependent rect. 20 6
780 32.78 atmosphere 1005.0 270 > th dose dependent rect. 23 7
789 32.79 humidity 80.0 30 > th dose independent rect. 20 3
791 32.79 atmosphere 1005.0 30 > th dose independent rect. 20 3
794 32.79 temperature 25.0 720 > th dose independent rect. 21 12
798 32.79 atmosphere 995.0 10 > th dose dependent rect. 12 8
807 32.80 wind 9.0 270 < th dose independent rect. 11 19
835 32.81 wind 1.0 270 > th dose independent rect. 6 5
836 32.81 temperature 10.0 270 > th dose independent rect. 6 5
837 32.81 atmosphere 995.0 270 > th dose independent rect. 6 5
838 32.81 atmosphere 1015.0 270 < th dose independent rect. 6 5
839 32.81 humidity 90.0 90 < th dose independent rect. 11 8
842 32.81 wind 7.0 10 < th dose independent rect. 2 18
843 32.81 temperature 10.0 270 > th dose independent rect. 11 19
844 32.81 precipitation 0.1 270 < th dose independent rect. 11 19
845 32.81 atmosphere 1000.0 10 > th dose independent rect. 24 20
861 32.81 humidity 50.0 90 > th dose dependent rect. 23 10
862 32.81 precipitation 0.1 270 < th dose dependent rect. 11 19
865 32.82 temperature 25.0 720 > th dose independent rect. 21 4
867 32.82 wind 9.0 270 < th dose independent rect. 6 5
868 32.82 temperature 30.0 270 < th dose independent rect. 6 5
870 32.82 precipitation 0.1 270 < th dose independent rect. 6 5
874 32.82 wind 1.0 270 > th dose independent rect. 11 19
875 32.82 atmosphere 995.0 270 > th dose independent rect. 11 19
880 32.82 atmosphere 995.0 270 > th dose dependent rect. 7 4
881 32.82 precipitation 0.1 270 < th dose dependent rect. 6 5
909 32.83 radiation 30.0 10 < th dose independent rect. 10 14
929 32.83 atmosphere 1005.0 10 > th dose dependent rect. 10 13
955 32.84 humidity 60.0 270 > th dose independent rect. 17 18
979 32.84 atmosphere 995.0 90 > th dose dependent rect. 12 21
992 32.85 wind 7.0 10 < th dose independent rect. 14 6
995 32.85 atmosphere 995.0 90 > th dose independent rect. 9 14