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Os06g0125600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.36 (0.0317) R2 : 0.784
β1 : -1.06 (0.117) R2dD : 0.0417 R2D : 0.00807
β2 : 4.57 (0.138) R2dC : 1.56 R2C : 0.47
β3 : 1.6 (0.112) R2dE : 0.299 R2E : -0.865
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.449 (0.0687) R2dN8 : 0.0283 R2N8 : -0.00207
σ : 0.587
deviance : 159.01
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C
peak time of C : 15.8
E
wheather : temperature
threshold : 19.92
memory length : 233
response mode : > th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 20.1
open length of G : 12.8

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
157.67 0.59 7.35 -1.01 4.59 1.64 0.964 0.536 -0.433 15.8 19.9 242 20 13
157.98 0.585 7.36 -1.08 4.6 1.62 0.589 -- -0.454 15.8 19.91 235 20.1 12.8
159.01 0.587 7.36 -1.06 4.58 1.61 -- -0.0446 -0.454 15.8 19.9 228 20.2 12.7
159.01 0.587 7.36 -1.06 4.57 1.6 -- -- -0.449 15.8 19.92 233 20.1 12.8
290.68 0.794 7.39 -1.31 -- 2.09 -- 0.0522 -0.489 -- 10.06 2716 21.3 12.9
225.04 0.703 7.29 -0.766 2.95 -- -0.0144 -- -0.234 15.4 -- -- -- --
225.04 0.703 7.29 -0.766 2.95 -- -- -- -0.234 15.4 -- -- -- --
268.26 0.763 7.26 -0.761 -- 2.19 -- -- -0.154 -- 10.56 2660 21.8 13.2
186.98 0.637 7.33 -- 4.36 1.35 -- -- -0.328 15.7 20.2 205 20.3 12.7
711.91 1.25 7.29 -0.891 -- -- -- -- -0.312 -- -- -- -- --
240.52 0.725 7.27 -- 2.96 -- -- -- -0.149 15.4 -- -- -- --
238.75 0.72 7.23 -- -- 2.92 -- -- -0.168 -- -47.38 2371 1.75 11.7
732.83 1.26 7.27 -- -- -- -- -- -0.213 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 160.67 temperature 20 270 > th dose independent rect. 20 13
2 162.04 temperature 20 270 > th dose independent rect. 4 22
12 167.70 temperature 30 90 < th dose dependent rect. 16 15
13 168.42 temperature 30 10 < th dose dependent rect. 16 16
14 168.49 temperature 20 270 > th dose independent rect. 19 7
24 170.20 temperature 20 270 > th dose independent rect. 19 20
25 170.24 temperature 20 10 > th dose independent rect. 21 7
26 170.27 temperature 20 270 > th dose independent rect. 18 22
34 170.89 temperature 10 90 > th dose dependent rect. 6 21
35 170.92 temperature 20 270 > th dose independent rect. 20 18
48 171.76 temperature 10 270 > th dose dependent rect. 20 13
57 172.33 temperature 20 270 < th dose independent rect. 15 15
73 173.30 temperature 10 10 > th dose dependent rect. 6 22
75 173.47 temperature 30 90 < th dose dependent rect. 3 18
81 174.00 temperature 20 10 > th dose independent rect. 21 19
82 174.02 temperature 20 10 > th dose independent rect. 6 22
83 174.07 temperature 30 270 < th dose dependent rect. 1 5
90 174.25 temperature 30 10 < th dose dependent rect. 3 18
105 174.60 temperature 25 90 < th dose dependent rect. 1 22
142 175.85 temperature 20 90 < th dose independent rect. 1 5
157 176.07 temperature 20 270 < th dose independent rect. 21 9
164 176.21 temperature 20 270 < th dose independent rect. 23 7
182 176.49 temperature 30 90 < th dose dependent rect. 3 4
189 176.69 temperature 20 270 < th dose independent sin 11 NA
213 177.15 temperature 20 270 < th dose independent rect. 24 22
222 177.30 temperature 20 270 > th dose independent sin 11 NA
246 177.71 temperature 15 270 > th dose dependent rect. 20 5
257 177.91 temperature 15 270 > th dose dependent rect. 19 7
275 178.19 temperature 20 10 > th dose independent rect. 21 13
308 178.69 temperature 20 90 > th dose independent sin 8 NA
312 178.78 temperature 20 720 > th dose independent rect. 14 10
316 178.83 temperature 20 10 > th dose independent rect. 23 17
318 178.84 temperature 30 90 < th dose dependent rect. 3 6
352 179.38 humidity 90 30 < th dose independent rect. 2 4
392 179.73 atmosphere 995 90 > th dose dependent rect. 16 14
396 179.76 temperature 20 10 < th dose independent rect. 17 16
415 179.88 temperature 15 10 > th dose dependent rect. 21 7
417 179.89 temperature 30 10 < th dose dependent rect. 12 20
438 180.19 temperature 30 10 < th dose dependent rect. 3 5
443 180.22 radiation 10 14400 < th dose dependent rect. 22 6
446 180.25 temperature 20 90 < th dose dependent rect. 1 7
474 180.56 temperature 30 90 < th dose dependent rect. 3 8
478 180.63 temperature 20 10 > th dose independent sin 7 NA
495 180.77 temperature 20 10 < th dose independent rect. 2 6
496 180.77 temperature 20 10 < th dose independent rect. 24 8
638 182.06 temperature 20 270 < th dose independent no NA NA
649 182.15 temperature 20 10 < th dose independent sin 8 NA
739 182.78 temperature 20 270 > th dose independent no NA NA
810 183.25 temperature 20 10 < th dose independent rect. 24 22
819 183.29 temperature 30 90 < th dose dependent sin 7 NA
927 184.00 radiation 20 270 < th dose independent rect. 15 14
935 184.04 radiation 40 270 < th dose dependent rect. 15 14