Os06g0125400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oligopeptide transporter OPT superfamily protein.
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Os06g0125400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oligopeptide transporter OPT superfamily protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 117.94 | 0.51 | 9.37 | -0.835 | 1.83 | 1.99 | -1.72 | -6.65 | 0.564 | 12.6 | 27.24 | 1258 | -- | -- |
| 124.9 | 0.521 | 9.18 | 0.671 | 1.84 | 1.28 | -1.54 | -- | 0.843 | 12.6 | 27.42 | 1220 | -- | -- |
| 130.31 | 0.532 | 9.36 | -0.81 | 1.84 | 1.98 | -- | -6.18 | 0.566 | 12.7 | 27.26 | 1258 | -- | -- |
| 134.9 | 0.541 | 9.19 | 0.617 | 1.86 | 1.34 | -- | -- | 0.84 | 12.6 | 27.42 | 1200 | -- | -- |
| 301.1 | 0.813 | 9.31 | 0.117 | -- | 2.19 | -- | -6.68 | 0.596 | -- | 26.2 | 1650 | -- | -- |
| 194.26 | 0.653 | 9.19 | 1.07 | 1.62 | -- | -1.85 | -- | 0.819 | 12.6 | -- | -- | -- | -- |
| 208.83 | 0.677 | 9.2 | 0.999 | 1.62 | -- | -- | -- | 0.81 | 12.6 | -- | -- | -- | -- |
| 310.76 | 0.821 | 9.23 | 0.568 | -- | 1.17 | -- | -- | 0.705 | -- | 26.59 | 6080 | -- | -- |
| 143.85 | 0.559 | 9.22 | -- | 1.85 | 1.44 | -- | -- | 0.71 | 12.7 | 26.6 | 1230 | -- | -- |
| 374.16 | 0.904 | 9.22 | 0.942 | -- | -- | -- | -- | 0.782 | -- | -- | -- | -- | -- |
| 235.13 | 0.717 | 9.22 | -- | 1.61 | -- | -- | -- | 0.699 | 12.6 | -- | -- | -- | -- |
| 314.68 | 0.826 | 9.32 | -- | -- | 1.34 | -- | -- | 0.37 | -- | 26.3 | 7490 | -- | -- |
| 397.55 | 0.931 | 9.25 | -- | -- | -- | -- | -- | 0.677 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 116.93 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 17 | 120.05 | wind | 7 | 43200 | > th | dose independent | rect. | 4 | 12 |
| 21 | 120.07 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 23 | 120.12 | wind | 7 | 43200 | > th | dose independent | rect. | 24 | 16 |
| 24 | 120.12 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 17 |
| 26 | 120.14 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 14 |
| 29 | 120.16 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 80 | 121.12 | wind | 7 | 43200 | < th | dose independent | sin | 1 | NA |
| 95 | 121.27 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 130 | 121.96 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 132 | 122.02 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 19 |
| 182 | 122.44 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 12 |
| 251 | 122.88 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 257 | 122.93 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 7 |
| 276 | 123.02 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 287 | 123.06 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 316 | 123.22 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 3 |
| 317 | 123.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 346 | 123.38 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 419 | 123.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 9 | 12 |
| 448 | 123.90 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 22 |
| 450 | 123.93 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 22 |
| 499 | 124.13 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 21 |
| 526 | 124.25 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 18 |
| 536 | 124.29 | wind | 7 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 597 | 124.45 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 18 |
| 610 | 124.48 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 628 | 124.53 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 635 | 124.54 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 637 | 124.54 | wind | 7 | 43200 | > th | dose independent | rect. | 9 | 16 |
| 643 | 124.55 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 659 | 124.58 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 669 | 124.61 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 743 | 124.83 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 772 | 124.93 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 796 | 125.05 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 5 |
| 808 | 125.09 | temperature | 30 | 720 | < th | dose independent | rect. | 16 | 13 |
| 883 | 125.50 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 17 |
| 902 | 125.56 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 7 |
| 909 | 125.58 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 10 |
| 918 | 125.64 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 5 |
| 921 | 125.65 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 3 |
| 927 | 125.67 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 23 |
| 934 | 125.70 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 951 | 125.77 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 969 | 125.87 | temperature | 30 | 1440 | > th | dose independent | rect. | 14 | 5 |
| 987 | 125.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 14 | 22 |