Os06g0125300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein prenyltransferase domain containing protein.
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Os06g0125300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein prenyltransferase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.62 | 0.296 | 8.71 | 1.47 | 0.581 | -0.421 | 0.345 | 2.72 | 0.207 | 16.1 | 14.05 | 1167 | -- | -- |
| 45.62 | 0.315 | 8.78 | 0.994 | 0.611 | -0.388 | 0.0449 | -- | 0.101 | 16 | 10.98 | 9090 | -- | -- |
| 39.94 | 0.294 | 8.71 | 1.47 | 0.585 | -0.411 | -- | 2.66 | 0.206 | 16.1 | 14.2 | 1217 | -- | -- |
| 45.62 | 0.315 | 8.78 | 0.997 | 0.606 | -0.392 | -- | -- | 0.106 | 16 | 10.1 | 9090 | -- | -- |
| 57.83 | 0.354 | 8.71 | 1.46 | -- | -0.594 | -- | 2.53 | 0.213 | -- | 12.8 | 1158 | -- | -- |
| 48.05 | 0.325 | 8.8 | 0.785 | 0.611 | -- | 0.0479 | -- | -0.0118 | 15.9 | -- | -- | -- | -- |
| 48.06 | 0.325 | 8.8 | 0.786 | 0.612 | -- | -- | -- | -0.0116 | 15.9 | -- | -- | -- | -- |
| 64.94 | 0.375 | 8.77 | 1.01 | -- | -0.468 | -- | -- | 0.11 | -- | 7.401 | 8386 | -- | -- |
| 54.44 | 0.344 | 8.86 | -- | 0.615 | 0.507 | -- | -- | -0.25 | 15.9 | -5.033 | 47520 | -- | -- |
| 68.56 | 0.387 | 8.8 | 0.761 | -- | -- | -- | -- | -0.0279 | -- | -- | -- | -- | -- |
| 64.33 | 0.375 | 8.82 | -- | 0.596 | -- | -- | -- | -0.0991 | 15.9 | -- | -- | -- | -- |
| 71.89 | 0.395 | 8.83 | -- | -- | 0.69 | -- | -- | -0.177 | -- | 24.36 | 29 | -- | -- |
| 83.82 | 0.427 | 8.82 | -- | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.23 | wind | 3 | 43200 | < th | dose dependent | rect. | 9 | 4 |
| 6 | 39.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 30 | 39.65 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 63 | 39.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 89 | 39.73 | temperature | 30 | 720 | < th | dose dependent | rect. | 4 | 22 |
| 104 | 39.75 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 146 | 39.79 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 20 |
| 149 | 39.80 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 172 | 39.82 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 173 | 39.82 | temperature | 30 | 1440 | < th | dose dependent | sin | 16 | NA |
| 270 | 39.88 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 22 |
| 315 | 39.91 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 337 | 39.92 | wind | 3 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 361 | 39.92 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 23 |
| 412 | 39.94 | temperature | 10 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 492 | 39.98 | wind | 1 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 494 | 39.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 496 | 39.98 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 7 |
| 601 | 40.03 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 659 | 40.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 23 |
| 660 | 40.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 677 | 40.06 | temperature | 30 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 741 | 40.10 | radiation | 1 | 4320 | > th | dose independent | rect. | 18 | 11 |
| 795 | 40.13 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 9 |
| 870 | 40.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 19 |
| 875 | 40.17 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 21 |
| 913 | 40.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 21 |
| 964 | 40.21 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 983 | 40.22 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |