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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0125000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NBS-LRR disease resistance protein homologue.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.08 (0.0498) R2 : 0.0018
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0951 (0.105) R2dN8 : 0.00233 R2N8 : 0.0018
σ : 0.937
deviance : 403.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
386.04 0.923 3.03 -0.0649 0.513 0.472 0.196 0.348 0.316 14.9 24.7 33 -- --
386.47 0.916 3.02 0.0365 0.51 0.481 -0.0287 -- 0.35 14.8 24.79 32 -- --
386.19 0.915 3.03 -0.0649 0.513 0.472 -- 0.348 0.316 14.8 24.7 33 -- --
386.47 0.916 3.02 0.0368 0.511 0.482 -- -- 0.35 14.8 24.79 32 -- --
396.58 0.933 3.06 -0.104 -- 0.246 -- 0.216 0.189 -- 24.7 33 -- --
400.41 0.938 3.08 -0.0934 0.19 -- -0.269 -- 0.0889 14 -- -- -- --
400.62 0.937 3.08 -0.101 0.196 -- -- -- 0.0879 14.7 -- -- -- --
396.82 0.932 3.05 -0.0431 -- 0.254 -- -- 0.21 -- 24.7 33 -- --
386.5 0.916 3.02 -- 0.507 0.478 -- -- 0.344 14.8 24.8 32 -- --
402.85 0.938 3.08 -0.109 -- -- -- -- 0.0829 -- -- -- -- --
400.89 0.937 3.08 -- 0.198 -- -- -- 0.0991 14.7 -- -- -- --
396.87 0.931 3.05 -- -- 0.257 -- -- 0.216 -- 24.7 33 -- --
403.17 0.937 3.08 -- -- -- -- -- 0.0951 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 372.00 radiation 30.0 10 > th dose independent rect. 12 1
3 373.46 humidity 70.0 30 < th dose independent rect. 12 1
4 373.57 radiation 10.0 10 > th dose dependent rect. 12 1
8 373.78 wind 3.0 30 > th dose independent rect. 12 1
11 373.85 humidity 90.0 30 < th dose dependent rect. 12 1
16 374.19 temperature 30.0 30 < th dose independent rect. 12 1
18 374.41 wind 7.0 30 < th dose independent rect. 12 1
19 374.43 temperature 20.0 30 > th dose independent rect. 12 1
24 374.55 atmosphere 1010.0 30 < th dose independent rect. 12 1
26 374.65 atmosphere 1015.0 30 < th dose dependent rect. 12 1
30 374.77 wind 9.0 30 < th dose dependent rect. 12 1
31 374.78 humidity 50.0 30 > th dose independent rect. 12 1
33 374.84 temperature 10.0 30 > th dose independent rect. 12 1
35 374.84 atmosphere 995.0 30 > th dose independent rect. 12 1
38 374.84 precipitation 0.1 30 < th dose independent rect. 12 1
39 374.84 temperature 10.0 30 > th dose independent rect. 13 23
40 374.84 precipitation 0.1 30 < th dose dependent rect. 12 1
41 374.87 temperature 10.0 30 > th dose dependent rect. 12 1
47 375.07 temperature 10.0 1440 > th dose independent rect. 13 1
51 375.07 atmosphere 995.0 1440 > th dose independent rect. 13 1
54 375.07 temperature 10.0 1440 > th dose independent rect. 14 23
59 375.15 atmosphere 995.0 30 > th dose independent rect. 13 23
61 375.25 atmosphere 995.0 30 > th dose dependent rect. 12 1
62 375.52 wind 1.0 30 > th dose dependent rect. 12 1
83 377.06 humidity 50.0 30 > th dose dependent rect. 12 1
94 377.27 humidity 90.0 90 > th dose independent rect. 8 1
104 377.58 wind 5.0 10 > th dose independent rect. 10 1
108 377.58 wind 5.0 10 > th dose dependent rect. 10 1
116 377.97 wind 7.0 90 > th dose dependent rect. 8 1
117 378.12 humidity 90.0 90 > th dose dependent rect. 8 1
119 378.17 temperature 10.0 30 > th dose dependent rect. 13 23
120 378.19 precipitation 0.1 30 < th dose independent rect. 13 23
121 378.19 precipitation 0.1 30 < th dose dependent rect. 13 23
124 378.38 wind 7.0 90 > th dose independent rect. 8 1
127 378.45 temperature 25.0 30 < th dose independent rect. 17 13
157 379.01 wind 9.0 90 > th dose dependent rect. 22 12
162 379.16 temperature 25.0 30 > th dose independent rect. 13 23
187 379.46 temperature 25.0 30 > th dose independent rect. 13 20
188 379.63 wind 9.0 30 < th dose independent rect. 13 23
213 379.86 temperature 25.0 30 < th dose independent rect. 12 18
220 380.24 temperature 20.0 30 > th dose dependent rect. 13 23
236 380.71 wind 9.0 90 > th dose dependent rect. 19 15
263 381.24 temperature 25.0 30 > th dose independent rect. 17 16
265 381.33 radiation 40.0 10 > th dose independent sin 14 NA
272 381.55 atmosphere 1005.0 10 > th dose dependent rect. 12 7
279 381.66 temperature 30.0 10 > th dose independent rect. 12 7
364 383.00 atmosphere 1005.0 10 < th dose dependent rect. 21 1
375 383.14 temperature 25.0 30 < th dose independent sin 14 NA
402 383.25 temperature 30.0 30 < th dose independent rect. 13 23
418 383.48 temperature 25.0 30 > th dose independent sin 13 NA
426 383.52 radiation 40.0 10 > th dose dependent sin 13 NA
432 383.57 wind 1.0 30 > th dose independent rect. 13 23
433 383.58 temperature 25.0 10 > th dose independent rect. 17 12
469 383.91 radiation 40.0 10 < th dose independent rect. 10 11
478 384.00 temperature 30.0 10 > th dose independent rect. 12 4
540 384.62 atmosphere 995.0 14400 > th dose independent rect. 7 6
541 384.62 radiation 40.0 10 < th dose independent rect. 6 15
545 384.64 temperature 25.0 30 < th dose independent rect. 8 22
559 384.74 temperature 25.0 30 < th dose independent rect. 17 22
563 384.79 radiation 40.0 10 < th dose independent sin 16 NA
569 384.84 temperature 25.0 30 > th dose independent rect. 17 7
583 385.03 humidity 70.0 43200 > th dose dependent rect. 13 12
621 385.39 temperature 25.0 90 > th dose dependent sin 11 NA
634 385.58 humidity 70.0 43200 > th dose dependent sin 17 NA
679 385.82 radiation 40.0 10 < th dose independent rect. 17 23
680 385.82 radiation 1.0 14400 < th dose dependent rect. 11 6
681 385.83 temperature 25.0 10 > th dose independent rect. 19 14
688 385.86 temperature 25.0 30 > th dose independent rect. 17 22
711 385.90 radiation 1.0 14400 < th dose dependent rect. 9 8
725 385.98 radiation 1.0 14400 > th dose independent rect. 12 1
727 385.98 humidity 50.0 10 > th dose independent rect. 13 23
728 385.99 temperature 25.0 10 > th dose dependent sin 11 NA
784 386.25 humidity 80.0 43200 < th dose independent rect. 24 19
795 386.29 wind 7.0 90 > th dose independent rect. 22 12
797 386.29 temperature 25.0 30 > th dose independent rect. 10 23
804 386.39 humidity 80.0 43200 < th dose independent rect. 11 14
823 386.54 humidity 80.0 43200 > th dose independent rect. 11 14
827 386.55 radiation 40.0 10 < th dose independent rect. 6 23
830 386.57 radiation 1.0 14400 < th dose independent rect. 12 1
831 386.57 temperature 20.0 90 > th dose dependent rect. 13 20
839 386.60 radiation 40.0 10 < th dose independent rect. 22 23
844 386.63 temperature 25.0 30 < th dose independent no NA NA
849 386.65 temperature 25.0 30 > th dose independent rect. 1 23
856 386.67 temperature 25.0 30 < th dose independent rect. 1 23
858 386.67 temperature 25.0 30 < th dose independent rect. 19 23
861 386.69 humidity 80.0 43200 > th dose independent rect. 10 16
862 386.69 temperature 25.0 30 < th dose independent rect. 21 23
869 386.74 temperature 30.0 720 < th dose independent rect. 1 12
874 386.75 atmosphere 1005.0 10 < th dose independent rect. 22 1
876 386.75 humidity 80.0 43200 < th dose independent rect. 10 16
882 386.78 atmosphere 1005.0 90 < th dose independent rect. 20 3
884 386.78 temperature 30.0 270 < th dose independent rect. 10 23
885 386.79 temperature 25.0 90 < th dose independent rect. 16 7
888 386.80 temperature 25.0 30 < th dose independent rect. 23 23
905 386.88 temperature 25.0 30 < th dose independent rect. 17 5
907 386.88 humidity 80.0 43200 > th dose dependent rect. 20 4
919 386.91 temperature 30.0 270 < th dose independent rect. 9 10
926 386.93 humidity 80.0 43200 > th dose independent rect. 24 19
945 386.94 radiation 1.0 14400 > th dose independent rect. 9 6
948 386.96 temperature 30.0 720 < th dose independent rect. 23 14
949 386.96 temperature 30.0 10 < th dose independent rect. 6 15
955 386.98 radiation 1.0 14400 < th dose independent rect. 9 6
963 387.02 temperature 30.0 10 < th dose dependent rect. 16 14
982 387.04 temperature 30.0 720 < th dose independent rect. 8 6
983 387.04 temperature 25.0 30 > th dose independent rect. 6 23