Os06g0124900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0124900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.05 | 0.176 | 13.1 | -0.676 | 0.295 | 0.754 | -0.16 | -1.74 | -0.045 | 18.6 | 9.953 | 1293 | -- | -- |
| 16.5 | 0.189 | 13 | -0.411 | 0.3 | 0.733 | -0.172 | -- | 0.0224 | 18.9 | 8.391 | 5617 | -- | -- |
| 14.1 | 0.175 | 13.1 | -0.663 | 0.287 | 0.761 | -- | -1.71 | -0.0427 | 18.4 | 9.908 | 1220 | -- | -- |
| 16.49 | 0.189 | 13 | -0.445 | 0.284 | 0.734 | -- | -- | -0.0105 | 19.2 | 7.93 | 7335 | -- | -- |
| 14.49 | 0.177 | 13 | -0.599 | -- | 0.946 | -- | -1.75 | -0.0355 | -- | 11.54 | 622 | -- | -- |
| 25.47 | 0.237 | 13 | -0.0744 | 0.279 | -- | -0.11 | -- | 0.186 | 19.5 | -- | -- | -- | -- |
| 25.5 | 0.236 | 13 | -0.0718 | 0.279 | -- | -- | -- | 0.186 | 19.5 | -- | -- | -- | -- |
| 16.82 | 0.191 | 13 | -0.293 | -- | 0.911 | -- | -- | 0.0467 | -- | 13.69 | 622 | -- | -- |
| 19.04 | 0.203 | 13 | -- | 0.227 | 0.609 | -- | -- | 0.0824 | 19 | 14.8 | 1939 | -- | -- |
| 29.66 | 0.254 | 13 | -0.0761 | -- | -- | -- | -- | 0.182 | -- | -- | -- | -- | -- |
| 25.64 | 0.237 | 13 | -- | 0.279 | -- | -- | -- | 0.194 | 19.5 | -- | -- | -- | -- |
| 18.87 | 0.202 | 13 | -- | -- | 0.805 | -- | -- | 0.0925 | -- | 13.1 | 603 | -- | -- |
| 29.81 | 0.255 | 13 | -- | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 14 | 10 |
| 2 | 13.79 | temperature | 10 | 1440 | > th | dose dependent | rect. | 15 | 8 |
| 15 | 13.82 | temperature | 30 | 1440 | < th | dose dependent | rect. | 15 | 8 |
| 18 | 13.83 | temperature | 10 | 1440 | > th | dose dependent | sin | 17 | NA |
| 33 | 13.84 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 52 | 13.86 | temperature | 10 | 1440 | > th | dose dependent | rect. | 17 | 2 |
| 79 | 13.88 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 105 | 13.90 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 115 | 13.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 238 | 14.00 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 23 |
| 309 | 14.05 | temperature | 10 | 1440 | > th | dose dependent | rect. | 2 | 21 |
| 316 | 14.05 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 326 | 14.06 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 19 |
| 401 | 14.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 416 | 14.09 | temperature | 30 | 1440 | < th | dose dependent | rect. | 4 | 19 |
| 479 | 14.11 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 621 | 14.17 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 690 | 14.20 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 707 | 14.22 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 18 |
| 740 | 14.24 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 15 |
| 770 | 14.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 18 |
| 827 | 14.29 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 15 |