Os06g0124400 - FiT-DB

FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0124400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.

log2(Expression) ~ Norm(μ, σ²)

μ = α + β₁D + β₂C + β₃E + β₄D*C + β₅D*E + γ₁N8

par.		value	(S.E.)
α	:	3.62	(0.0466)	R²	:	0.456
β₁	:	--	(--)	R²_dD	:	--	R²_D	:	--
β₂	:	--	(--)	R²_dC	:	--	R²_C	:	--
β₃	:	4.95	(0.259)	R²_dE	:	0.444	R²_E	:	0.453
β₄	:	--	(--)	R²_dD*C	:	--	R²_D*C	:	--
β₅	:	--	(--)	R²_dD*E	:	--	R²_D*E	:	--
γ₁	:	-0.131	(0.099)	R²_dN8	:	0.00278	R²_N8	:	0.0114
σ	:	0.873
deviance	:	351.68
__

_____

C
peak time of C	:	--
E
wheather	:	wind
threshold	:	6.461
memory length	:	4387
response mode	:	> th
dose dependency	:	dose dependent
G
type of G	:	rect.
peak or start time of G	:	20.2
open length of G	:	0.266

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance	σ	α	β₁	β₂	β₃	β₄	β₅	γ₁	peak time of C	threshold	memory length	peak or start time of G	open length of G
335.78	0.861	3.7	1.02	0.184	2.75	1.39	12	-0.151	15.9	4.953	4156	20	2.8
381.09	0.909	3.75	0.735	0.192	2.75	0.46	--	-0.0963	14.8	5.447	4214	20.1	0.44
340.03	0.859	3.69	1.04	0.223	2.75	--	11.9	-0.139	13.5	5	4110	20	2.8
348.62	0.87	3.61	0.318	0.227	4.14	--	--	-0.117	13.7	6	4534	20.2	0.233
343.23	0.863	3.69	1.04	--	2.75	--	12	-0.139	--	5.036	4110	20	2.82
605.73	1.15	3.66	0.869	0.236	--	0.841	--	-0.315	14.1	--	--	--	--
607.75	1.15	3.66	0.892	0.253	--	--	--	-0.311	12.5	--	--	--	--
349.51	0.871	3.61	0.37	--	4.27	--	--	-0.0723	--	5.968	4460	20.2	0.233
351.45	0.873	3.61	--	0.162	4.37	--	--	-0.0999	12.7	6.033	4531	20.2	0.233
611.75	1.16	3.66	0.883	--	--	--	--	-0.315	--	--	--	--	--
628.7	1.17	3.68	--	0.24	--	--	--	-0.41	12.3	--	--	--	--
351.68	0.873	3.62	--	--	4.95	--	--	-0.131	--	6.461	4387	20.2	0.266
632.33	1.17	3.69	--	--	--	--	--	-0.413	--	--	--	--	--

Results of the grid search

Summarized heatmap of deviance

Histogram

Local optima within top1000 grid-points

rank	deviance	wheather	threshold	memory length	response mode	dose dependency	type of G	peak or start time of G	open length of G
1	338.24	wind	5	4320	> th	dose dependent	rect.	20	3
5	341.95	wind	7	4320	< th	dose independent	rect.	18	4
22	348.24	wind	7	4320	> th	dose independent	rect.	18	4
28	351.99	humidity	90	1440	< th	dose dependent	rect.	3	1
44	355.25	wind	9	4320	> th	dose dependent	rect.	19	7
68	357.10	wind	5	4320	> th	dose independent	rect.	21	1
112	359.76	humidity	90	1440	< th	dose dependent	rect.	23	8
130	362.23	humidity	90	1440	< th	dose dependent	rect.	2	5
161	372.91	atmosphere	995	14400	< th	dose independent	rect.	17	1
162	372.91	atmosphere	995	14400	< th	dose dependent	rect.	17	1
169	372.92	humidity	90	1440	< th	dose dependent	rect.	23	5
188	373.43	humidity	80	1440	< th	dose independent	rect.	22	1
192	374.32	atmosphere	995	14400	> th	dose independent	rect.	16	2
218	378.35	humidity	70	1440	> th	dose dependent	rect.	1	6
226	378.87	atmosphere	995	14400	> th	dose independent	rect.	13	6
227	378.88	atmosphere	995	14400	> th	dose independent	rect.	13	8
266	379.31	atmosphere	995	14400	> th	dose independent	rect.	8	11
267	379.31	atmosphere	995	14400	> th	dose independent	rect.	8	13
422	386.46	humidity	70	1440	> th	dose dependent	rect.	1	3
434	387.35	atmosphere	995	14400	> th	dose independent	rect.	24	16
439	387.49	atmosphere	995	14400	< th	dose independent	rect.	3	13
452	387.84	atmosphere	995	14400	> th	dose independent	rect.	19	21
459	388.50	atmosphere	995	14400	< th	dose independent	rect.	18	22
472	388.82	humidity	90	1440	< th	dose dependent	rect.	5	2
473	388.87	humidity	70	1440	> th	dose dependent	rect.	3	1
501	389.26	atmosphere	995	14400	> th	dose independent	sin	3	NA
520	389.55	wind	5	1440	> th	dose independent	rect.	7	16
545	389.81	atmosphere	995	14400	> th	dose independent	sin	22	NA
555	390.03	atmosphere	995	14400	< th	dose independent	sin	3	NA
566	390.27	atmosphere	995	14400	< th	dose independent	sin	22	NA
581	390.44	atmosphere	995	14400	< th	dose dependent	sin	0	NA
750	391.98	atmosphere	995	14400	> th	dose independent	rect.	24	21
801	392.09	atmosphere	995	14400	> th	dose independent	no	NA	NA
804	392.09	atmosphere	995	14400	> th	dose independent	rect.	14	23
811	392.11	atmosphere	995	14400	> th	dose independent	rect.	12	23
863	392.58	wind	7	4320	< th	dose independent	rect.	8	1
991	393.11	atmosphere	995	14400	< th	dose independent	no	NA	NA