Os06g0122800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, putative npRNA.
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Os06g0122800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, putative npRNA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 282.8 | 0.79 | 3.27 | -0.703 | 0.395 | 2.19 | -1.36 | 5.83 | 0.0516 | 4.07 | 19.73 | 22 | -- | -- |
| 294.13 | 0.805 | 3.22 | -0.595 | 0.44 | 0.225 | -0.897 | -- | 0.089 | 4.34 | 24.2 | 110 | -- | -- |
| 279.88 | 0.785 | 3.29 | -0.552 | 0.415 | 5.25 | -- | 12 | 0.0608 | 4.49 | 18.6 | 3 | -- | -- |
| 296.24 | 0.807 | 3.22 | -0.585 | 0.437 | 0.277 | -- | -- | 0.0891 | 4.48 | 22.56 | 22 | -- | -- |
| 288.59 | 0.796 | 3.3 | -0.513 | -- | 6.06 | -- | 13.6 | 0.0737 | -- | 18.5 | 3 | -- | -- |
| 294.87 | 0.805 | 3.23 | -0.648 | 0.466 | -- | -0.893 | -- | 0.0514 | 4.15 | -- | -- | -- | -- |
| 297.12 | 0.807 | 3.23 | -0.638 | 0.461 | -- | -- | -- | 0.0563 | 4.22 | -- | -- | -- | -- |
| 304.22 | 0.812 | 3.21 | -0.514 | -- | 0.479 | -- | -- | 0.151 | -- | 30.9 | 16 | -- | -- |
| 304.45 | 0.817 | 3.19 | -- | 0.405 | 0.469 | -- | -- | 0.191 | 4.82 | 24 | 13 | -- | -- |
| 308.61 | 0.821 | 3.23 | -0.62 | -- | -- | -- | -- | 0.0686 | -- | -- | -- | -- | -- |
| 307.86 | 0.821 | 3.21 | -- | 0.449 | -- | -- | -- | 0.127 | 4.25 | -- | -- | -- | -- |
| 310.8 | 0.821 | 3.19 | -- | -- | 0.619 | -- | -- | 0.231 | -- | 30.67 | 16 | -- | -- |
| 318.74 | 0.833 | 3.21 | -- | -- | -- | -- | -- | 0.137 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 274.73 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 3 |
| 25 | 277.07 | wind | 3 | 270 | > th | dose independent | rect. | 2 | 1 |
| 26 | 278.34 | temperature | 20 | 30 | < th | dose dependent | sin | 6 | NA |
| 27 | 278.46 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 4 |
| 30 | 278.49 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 15 |
| 32 | 278.50 | temperature | 20 | 30 | < th | dose dependent | rect. | 3 | 11 |
| 71 | 279.04 | wind | 3 | 270 | > th | dose dependent | rect. | 2 | 1 |
| 74 | 279.15 | temperature | 20 | 10 | < th | dose dependent | rect. | 3 | 1 |
| 84 | 279.53 | wind | 5 | 270 | > th | dose dependent | rect. | 2 | 5 |
| 93 | 279.74 | wind | 5 | 270 | > th | dose independent | rect. | 2 | 4 |
| 99 | 280.18 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 114 | 280.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 10 |
| 121 | 280.75 | temperature | 20 | 10 | < th | dose independent | rect. | 3 | 3 |
| 154 | 281.43 | temperature | 20 | 30 | < th | dose dependent | rect. | 17 | 14 |
| 160 | 281.48 | temperature | 20 | 30 | < th | dose dependent | rect. | 21 | 10 |
| 165 | 281.49 | temperature | 20 | 30 | < th | dose dependent | rect. | 13 | 18 |
| 250 | 281.81 | temperature | 15 | 10 | > th | dose dependent | rect. | 23 | 11 |
| 310 | 282.02 | temperature | 20 | 10 | < th | dose dependent | rect. | 24 | 18 |
| 352 | 282.27 | temperature | 15 | 10 | > th | dose dependent | sin | 9 | NA |
| 356 | 282.34 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 4 | 2 |
| 358 | 282.35 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 7 |
| 360 | 282.40 | atmosphere | 1005 | 90 | < th | dose independent | rect. | 4 | 1 |
| 365 | 282.42 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 12 |
| 378 | 282.47 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 16 |
| 406 | 282.74 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 6 |
| 407 | 282.78 | temperature | 20 | 90 | < th | dose independent | sin | 7 | NA |
| 411 | 282.85 | temperature | 30 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 488 | 283.22 | temperature | 20 | 10 | < th | dose dependent | rect. | 22 | 20 |
| 567 | 283.33 | temperature | 20 | 90 | < th | dose independent | rect. | 2 | 21 |
| 580 | 283.34 | temperature | 20 | 30 | < th | dose dependent | no | NA | NA |
| 647 | 283.50 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 9 |
| 665 | 283.65 | temperature | 20 | 30 | < th | dose dependent | rect. | 5 | 23 |
| 718 | 283.97 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 15 |
| 724 | 284.00 | temperature | 30 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 749 | 284.04 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 15 |
| 766 | 284.11 | temperature | 25 | 10 | > th | dose independent | rect. | 7 | 1 |
| 769 | 284.13 | temperature | 20 | 90 | > th | dose independent | sin | 9 | NA |
| 790 | 284.23 | wind | 3 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 824 | 284.43 | temperature | 20 | 90 | > th | dose independent | rect. | 21 | 13 |
| 825 | 284.43 | temperature | 20 | 90 | > th | dose independent | rect. | 19 | 15 |
| 830 | 284.47 | temperature | 20 | 90 | < th | dose independent | rect. | 17 | 13 |
| 852 | 284.60 | humidity | 80 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 870 | 284.68 | temperature | 20 | 90 | < th | dose independent | rect. | 12 | 18 |
| 871 | 284.68 | temperature | 30 | 720 | > th | dose dependent | rect. | 18 | 1 |
| 893 | 284.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 975 | 285.03 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 15 |
| 985 | 285.08 | humidity | 80 | 14400 | < th | dose independent | rect. | 24 | 9 |
| 987 | 285.09 | temperature | 20 | 90 | < th | dose independent | rect. | 23 | 19 |