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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0122200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.87 (0.0211) R2 : 0.00228
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0454 (0.0444) R2dN8 : 0.00295 R2N8 : 0.00228
σ : 0.397
deviance : 72.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
66.57 0.38 2.87 0.154 0.0974 0.605 0.0593 2.1 0.0666 0.489 1015 10 -- --
67.45 0.383 2.87 0.192 0.0923 1.11 0.18 -- 0.068 23.7 1016 11 -- --
66.58 0.383 2.87 0.153 0.0979 0.705 -- 2.4 0.066 0.854 1015 10 -- --
67.54 0.383 2.87 0.181 0.0986 1.16 -- -- 0.0678 0.976 1016 11 -- --
67.17 0.384 2.87 0.156 -- 0.758 -- 2.41 0.0684 -- 1015 10 -- --
70.47 0.394 2.87 0.187 0.116 -- 0.246 -- 0.0651 23.7 -- -- -- --
70.69 0.394 2.87 0.177 0.118 -- -- -- 0.0633 0.658 -- -- -- --
68.04 0.384 2.87 0.161 -- 1.23 -- -- 0.0731 -- 1016 11 -- --
68.19 0.385 2.87 -- 0.0982 1.2 -- -- 0.0573 1.02 1016 11 -- --
71.56 0.395 2.87 0.181 -- -- -- -- 0.0654 -- -- -- -- --
71.51 0.396 2.88 -- 0.121 -- -- -- 0.0437 0.728 -- -- -- --
68.72 0.386 2.87 -- -- 1.26 -- -- 0.0555 -- 1016 11 -- --
72.43 0.397 2.87 -- -- -- -- -- 0.0454 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.43 wind 1 270 < th dose independent rect. 19 1
3 63.43 wind 1 270 < th dose dependent rect. 19 1
5 63.49 atmosphere 1000 270 < th dose independent rect. 20 1
6 63.49 atmosphere 1000 90 < th dose dependent rect. 21 2
12 63.51 atmosphere 1000 90 < th dose dependent rect. 17 7
68 63.62 atmosphere 1000 90 < th dose independent rect. 17 7
70 63.63 atmosphere 1000 10 < th dose independent rect. 22 2
75 63.63 wind 9 720 > th dose dependent rect. 17 1
79 63.64 atmosphere 1000 90 < th dose independent rect. 22 1
135 63.70 wind 7 720 > th dose dependent rect. 14 1
184 63.82 atmosphere 1000 10 < th dose independent rect. 22 6
203 63.83 atmosphere 1000 10 < th dose independent rect. 18 10
369 64.09 atmosphere 1000 30 > th dose independent sin 12 NA
375 64.10 wind 9 720 > th dose independent rect. 17 1
433 64.25 atmosphere 1000 10 < th dose independent sin 11 NA
461 64.29 wind 9 720 > th dose dependent sin 12 NA
502 64.38 wind 9 720 > th dose dependent rect. 14 4
506 64.39 wind 7 720 > th dose independent rect. 14 1
708 64.88 atmosphere 1000 10 < th dose dependent sin 11 NA
750 64.97 humidity 50 720 < th dose dependent rect. 13 1
773 65.07 wind 9 1440 < th dose independent rect. 17 1
788 65.10 atmosphere 1015 10 < th dose independent rect. 1 23
845 65.28 humidity 50 720 < th dose dependent rect. 16 22
985 65.80 humidity 50 720 < th dose independent rect. 12 2
994 65.85 humidity 50 720 < th dose dependent sin 7 NA
997 65.88 wind 7 1440 < th dose independent rect. 14 1
998 65.88 humidity 50 1440 < th dose independent rect. 10 2