Os06g0121800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os06g0121800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 379.03 | 0.915 | 3.87 | -1.67 | 0.431 | -0.272 | -0.88 | 3.92 | -0.586 | 8.23 | 24.8 | 2053 | -- | -- |
| 391.99 | 0.929 | 3.74 | -0.578 | 0.383 | -0.27 | -0.379 | -- | -0.251 | 7.6 | 18.8 | 1769 | -- | -- |
| 379.83 | 0.908 | 3.88 | -1.74 | 0.386 | -0.344 | -- | 4.15 | -0.585 | 8.14 | 25.09 | 2707 | -- | -- |
| 391.56 | 0.922 | 3.76 | -0.703 | 0.39 | -0.502 | -- | -- | -0.286 | 8.17 | 17.5 | 4295 | -- | -- |
| 388.35 | 0.918 | 3.88 | -1.72 | -- | -0.318 | -- | 4.24 | -0.57 | -- | 25.1 | 2722 | -- | -- |
| 393.63 | 0.93 | 3.73 | -0.509 | 0.388 | -- | -0.465 | -- | -0.222 | 7.96 | -- | -- | -- | -- |
| 394.25 | 0.93 | 3.73 | -0.523 | 0.39 | -- | -- | -- | -0.222 | 7.75 | -- | -- | -- | -- |
| 397.15 | 0.928 | 3.77 | -0.866 | -- | -0.709 | -- | -- | -0.35 | -- | 16.8 | 9310 | -- | -- |
| 400.56 | 0.937 | 3.72 | -- | 0.392 | 0.672 | -- | -- | -0.16 | 7.94 | 15.2 | 3580 | -- | -- |
| 402.48 | 0.937 | 3.74 | -0.518 | -- | -- | -- | -- | -0.217 | -- | -- | -- | -- | -- |
| 401.45 | 0.937 | 3.72 | -- | 0.386 | -- | -- | -- | -0.164 | 7.85 | -- | -- | -- | -- |
| 408.06 | 0.941 | 3.72 | -- | -- | 0.35 | -- | -- | -0.154 | -- | 11.43 | 6324 | -- | -- |
| 409.56 | 0.945 | 3.73 | -- | -- | -- | -- | -- | -0.159 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 367.03 | radiation | 10.0 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 13 | 368.22 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 14 | 368.63 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 15 | 368.87 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 19 | 368.92 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 34 | 368.96 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 64 | 368.96 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 175 | 369.61 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 230 | 369.89 | atmosphere | 995.0 | 43200 | < th | dose dependent | sin | 13 | NA |
| 231 | 369.90 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 261 | 370.01 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 11 | NA |
| 262 | 370.02 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 11 | NA |
| 272 | 370.06 | radiation | 40.0 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 289 | 370.06 | radiation | 40.0 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 413 | 370.98 | humidity | 50.0 | 90 | < th | dose independent | rect. | 13 | 1 |
| 416 | 370.98 | humidity | 50.0 | 90 | < th | dose dependent | rect. | 13 | 1 |
| 420 | 371.01 | atmosphere | 1000.0 | 90 | < th | dose independent | rect. | 12 | 1 |
| 422 | 371.01 | atmosphere | 1000.0 | 90 | < th | dose dependent | rect. | 12 | 1 |
| 440 | 371.19 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 441 | 371.19 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 455 | 371.34 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 456 | 371.34 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 484 | 371.49 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 496 | 371.49 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 4 |
| 498 | 371.49 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 572 | 371.88 | humidity | 60.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 591 | 372.01 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 603 | 372.11 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 605 | 372.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 606 | 372.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 608 | 372.13 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 642 | 372.23 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 644 | 372.25 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 19 | 14 |
| 648 | 372.28 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 655 | 372.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 668 | 372.42 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 669 | 372.43 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 672 | 372.47 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 677 | 372.52 | atmosphere | 1000.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 678 | 372.53 | wind | 1.0 | 14400 | < th | dose independent | rect. | 23 | 2 |
| 680 | 372.56 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 681 | 372.56 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 696 | 372.67 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 699 | 372.68 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 706 | 372.70 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 709 | 372.70 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 23 | 9 |
| 717 | 372.74 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 14 |
| 730 | 372.77 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 754 | 372.81 | atmosphere | 1010.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 761 | 372.82 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 765 | 372.83 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 6 |
| 778 | 372.84 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 2 | 2 |
| 780 | 372.84 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 4 |
| 789 | 372.85 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 6 |
| 824 | 372.90 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 1 | 4 |
| 831 | 372.90 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 23 | 15 |
| 840 | 372.92 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 883 | 372.96 | atmosphere | 1010.0 | 14400 | < th | dose independent | rect. | 21 | 9 |
| 896 | 372.97 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 6 |
| 899 | 372.97 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 16 | 15 |
| 916 | 372.98 | atmosphere | 1010.0 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 934 | 372.99 | atmosphere | 1005.0 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 953 | 373.01 | atmosphere | 1010.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 989 | 373.02 | atmosphere | 1015.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |