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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0121500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.6 (0.0484) R2 : 0.196
β1 : -1.38 (0.182) R2dD : 0.117 R2D : 0.144
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.5 (0.287) R2dE : 0.0482 R2E : 0.0826
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0965 (0.105) R2dN8 : 0.0014 R2N8 : -0.00131
σ : 0.901
deviance : 374.51
__
_____
C
peak time of C : --
E
wheather : wind
threshold : 9.69
memory length : 1541
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
357.29 0.888 3.58 -1.44 0.349 0.731 -1.41 -3.99 -0.0913 11.9 9.8 1256 -- --
358.28 0.882 3.61 -1.38 0.359 1.54 -1.42 -- -0.111 11.8 10 1252 -- --
365.82 0.891 3.58 -1.48 0.367 0.799 -- -3.53 -0.0988 11.4 9.8 1255 -- --
366.63 0.892 3.62 -1.42 0.356 1.53 -- -- -0.107 11.4 9.8 1254 -- --
373.81 0.9 3.6 -1.5 -- 0.786 -- -3.43 -0.108 -- 9.7 1252 -- --
379.92 0.914 3.63 -1.58 0.33 -- -1.32 -- -0.19 11.8 -- -- -- --
387.4 0.922 3.63 -1.63 0.339 -- -- -- -0.196 11.3 -- -- -- --
374.51 0.901 3.6 -1.38 -- 1.5 -- -- -0.0965 -- 9.69 1541 -- --
416.27 0.95 3.57 -- 0.401 1.94 -- -- 0.0531 11.3 9.706 1545 -- --
394.58 0.928 3.64 -1.64 -- -- -- -- -0.2 -- -- -- -- --
457.8 1 3.59 -- 0.356 -- -- -- -0.0144 11.6 -- -- -- --
424.59 0.96 3.58 -- -- 1.99 -- -- 0.0744 -- 9.8 1545 -- --
465.77 1.01 3.6 -- -- -- -- -- -0.0174 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.75 wind 5 1440 < th dose independent rect. 7 2
3 341.23 wind 5 1440 > th dose independent rect. 7 2
4 341.25 temperature 15 14400 < th dose dependent rect. 11 1
5 341.53 temperature 15 14400 < th dose dependent rect. 9 3
11 343.44 temperature 15 14400 < th dose dependent rect. 5 7
14 343.84 humidity 50 43200 < th dose dependent rect. 18 2
35 346.74 temperature 15 14400 < th dose independent rect. 6 6
36 346.74 wind 5 1440 > th dose dependent rect. 8 1
39 346.90 atmosphere 1000 43200 < th dose dependent rect. 21 1
57 347.43 atmosphere 1005 43200 < th dose dependent rect. 18 1
60 347.52 atmosphere 1000 43200 < th dose dependent rect. 18 7
92 348.04 temperature 15 14400 < th dose dependent sin 1 NA
95 348.09 atmosphere 1000 43200 < th dose dependent rect. 24 1
96 348.09 atmosphere 1005 43200 < th dose dependent rect. 8 18
98 348.11 atmosphere 1005 43200 < th dose dependent rect. 9 16
142 348.39 atmosphere 1005 43200 < th dose dependent sin 19 NA
193 348.61 wind 1 4320 > th dose independent rect. 8 1
205 348.65 atmosphere 1005 43200 < th dose dependent rect. 17 21
206 348.66 atmosphere 1000 43200 > th dose independent rect. 19 2
235 348.72 temperature 15 14400 < th dose dependent rect. 5 20
250 348.75 atmosphere 1005 43200 < th dose dependent no NA NA
263 348.76 atmosphere 1005 43200 < th dose dependent rect. 13 23
283 348.81 atmosphere 1005 43200 < th dose dependent rect. 21 23
284 348.81 atmosphere 1005 43200 < th dose dependent rect. 24 23
290 348.83 atmosphere 1000 43200 < th dose dependent sin 12 NA
432 349.15 wind 7 720 < th dose independent rect. 21 17
446 349.19 temperature 15 14400 > th dose independent rect. 10 1
456 349.21 temperature 15 14400 < th dose independent rect. 10 1
485 349.28 temperature 15 14400 > th dose independent rect. 10 3
515 349.35 atmosphere 1000 43200 < th dose independent rect. 19 1
516 349.35 temperature 15 14400 < th dose independent rect. 10 3
611 349.73 atmosphere 995 43200 > th dose independent rect. 3 5
614 349.74 humidity 50 43200 < th dose dependent rect. 18 10
617 349.75 atmosphere 995 43200 < th dose independent rect. 3 5
619 349.76 atmosphere 1000 43200 > th dose independent rect. 1 1
623 349.77 atmosphere 995 43200 > th dose independent rect. 24 9
624 349.78 atmosphere 1000 43200 < th dose independent rect. 1 1
635 349.82 atmosphere 995 43200 < th dose independent rect. 24 9
638 349.83 atmosphere 1005 43200 < th dose dependent rect. 13 1
648 349.85 atmosphere 995 43200 < th dose dependent rect. 2 6
695 350.03 wind 5 720 < th dose independent rect. 3 11
703 350.05 atmosphere 995 43200 > th dose independent rect. 16 18
717 350.10 atmosphere 995 43200 < th dose independent rect. 16 18
730 350.14 temperature 15 14400 < th dose dependent rect. 21 2
759 350.25 wind 3 270 > th dose dependent rect. 4 5
781 350.30 atmosphere 995 43200 > th dose independent sin 9 NA
784 350.31 atmosphere 995 43200 < th dose independent sin 9 NA
804 350.40 atmosphere 1010 14400 < th dose independent rect. 21 7
830 350.46 wind 7 1440 > th dose dependent rect. 22 15
852 350.51 temperature 15 14400 < th dose dependent rect. 16 21
865 350.55 temperature 15 14400 > th dose independent rect. 7 6
874 350.56 atmosphere 1010 14400 < th dose independent rect. 2 2
896 350.59 temperature 15 14400 < th dose dependent no NA NA
903 350.60 atmosphere 995 43200 > th dose independent rect. 20 13
976 350.75 atmosphere 1000 43200 > th dose independent rect. 18 9
994 350.77 atmosphere 1010 14400 > th dose independent rect. 21 8