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Os06g0120200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF594 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.11 (0.348) R2 : 0.49
β1 : -7.18 (1.06) R2dD : 4.28 R2D : -15.7
β2 : 0.926 (0.0791) R2dC : 0.155 R2C : -10
β3 : -107 (14) R2dE : 377 R2E : -370
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -319 (42.6) R2dD*E : 358 R2D*E : -365
γ1 : 0.484 (0.0696) R2dN8 : 0.0738 R2N8 : -9.51
σ : 0.604
deviance : 168.18
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C
peak time of C : 9.66
E
wheather : radiation
threshold : 1.014
memory length : 1333
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11
open length of G : 0.971

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
166.66 0.607 9.11 -7.16 0.922 -107 -0.637 -319 0.486 9.75 1.027 1331 11 0.958
232.84 0.716 11.7 1.06 0.897 -0.0452 -0.663 -- 0.595 10.2 1.027 1331 11 0.958
168.18 0.604 9.11 -7.18 0.926 -107 -- -319 0.484 9.66 1.014 1333 11 0.971
206.32 0.669 11.7 0.845 0.912 -0.967 -- -- 0.465 9.42 17.34 1103 11.9 4.65
218.61 0.689 9.14 -7.16 -- -107 -- -319 0.497 -- 0.7574 1328 11 1.01
232.84 0.715 11.7 1.06 0.896 -- -0.661 -- 0.595 10.2 -- -- -- --
234.49 0.717 11.7 1.04 0.904 -- -- -- 0.593 10 -- -- -- --
211 0.677 11.7 1.03 -- -1.32 -- -- 0.473 -- 74.45 994 11.5 4.92
222.78 0.695 11.7 -- 0.792 -1.26 -- -- 0.356 9.15 24.32 1203 10.7 4.93
283.72 0.787 11.7 1.02 -- -- -- -- 0.592 -- -- -- -- --
262.74 0.758 11.7 -- 0.9 -- -- -- 0.477 9.95 -- -- -- --
229.15 0.705 11.8 -- -- -1.63 -- -- 0.308 -- 69.16 1145 10.4 5.23
311.38 0.824 11.7 -- -- -- -- -- 0.478 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 172.71 radiation 1.0 1440 < th dose independent rect. 11 1
2 172.71 radiation 1.0 1440 < th dose dependent rect. 11 1
3 177.64 humidity 90.0 720 > th dose dependent rect. 20 1
4 177.88 wind 1.0 720 < th dose independent rect. 23 1
5 180.18 atmosphere 1005.0 720 < th dose independent rect. 19 6
6 181.09 precipitation 0.1 270 > th dose independent rect. 2 2
7 181.21 precipitation 0.1 270 > th dose dependent rect. 2 2
9 181.40 radiation 10.0 1440 < th dose dependent sin 20 NA
11 181.67 humidity 90.0 720 > th dose dependent rect. 20 3
13 181.75 radiation 1.0 1440 < th dose independent rect. 13 1
14 181.75 radiation 1.0 1440 < th dose dependent rect. 13 1
15 181.84 radiation 1.0 1440 < th dose independent rect. 11 3
16 181.84 radiation 1.0 1440 < th dose dependent rect. 11 3
33 182.50 radiation 1.0 1440 > th dose independent rect. 13 1
34 182.52 wind 1.0 1440 > th dose independent rect. 23 1
36 182.65 atmosphere 1005.0 720 < th dose independent rect. 21 2
38 182.78 radiation 20.0 1440 < th dose dependent rect. 11 1
40 182.89 radiation 10.0 1440 < th dose dependent rect. 8 11
42 182.91 radiation 10.0 1440 < th dose dependent rect. 8 16
46 182.95 radiation 10.0 1440 < th dose dependent rect. 8 20
51 183.00 radiation 10.0 1440 < th dose dependent rect. 11 19
72 183.28 radiation 1.0 1440 > th dose independent rect. 11 3
75 183.32 radiation 10.0 1440 < th dose dependent rect. 11 8
81 183.35 radiation 10.0 1440 < th dose dependent rect. 11 13
89 183.39 radiation 10.0 1440 < th dose dependent rect. 11 17
132 183.80 atmosphere 1005.0 10 < th dose dependent rect. 1 6
217 186.26 radiation 10.0 1440 < th dose independent rect. 13 11
222 186.30 radiation 10.0 1440 < th dose independent rect. 13 15
287 187.38 radiation 20.0 1440 < th dose independent rect. 11 2
327 187.69 precipitation 0.1 270 > th dose independent rect. 24 4
329 187.78 wind 7.0 4320 > th dose independent rect. 17 2
341 188.05 precipitation 0.1 270 > th dose dependent rect. 24 4
404 188.96 wind 1.0 720 < th dose dependent rect. 23 1
434 189.44 radiation 20.0 1440 < th dose independent rect. 11 19
456 189.63 radiation 10.0 1440 < th dose independent sin 16 NA
460 189.67 wind 7.0 4320 < th dose independent rect. 18 1
492 189.95 atmosphere 1005.0 270 < th dose dependent rect. 1 1
497 189.99 wind 1.0 90 < th dose independent rect. 23 3
545 190.48 wind 1.0 90 < th dose independent rect. 21 5
576 190.85 wind 7.0 4320 > th dose dependent rect. 17 2
586 191.00 radiation 10.0 1440 < th dose dependent rect. 2 17
588 191.01 radiation 10.0 1440 < th dose dependent rect. 2 22
615 191.07 radiation 10.0 1440 < th dose dependent rect. 21 22
618 191.08 radiation 10.0 1440 < th dose dependent rect. 23 20
624 191.09 radiation 10.0 1440 < th dose dependent no NA NA
657 191.30 radiation 10.0 1440 > th dose independent rect. 11 22
661 191.35 wind 1.0 90 < th dose independent rect. 17 9
707 191.64 wind 1.0 90 < th dose independent rect. 11 15
747 192.34 radiation 10.0 1440 > th dose independent rect. 11 19
749 192.36 radiation 10.0 1440 > th dose independent rect. 11 7
766 192.39 radiation 1.0 1440 > th dose dependent rect. 11 8
847 193.03 atmosphere 1005.0 270 < th dose independent rect. 21 9
854 193.08 radiation 1.0 1440 > th dose dependent rect. 11 2
867 193.22 atmosphere 1005.0 720 > th dose independent rect. 19 6
930 193.46 radiation 10.0 1440 > th dose independent rect. 8 22
932 193.47 radiation 10.0 1440 > th dose independent rect. 8 10
949 193.50 humidity 70.0 720 > th dose dependent rect. 18 3