Os06g0119600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os06g0119600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 249.3 | 0.742 | 4.07 | -1.21 | 0.375 | 1.81 | -0.618 | -3.38 | 0.655 | 15.9 | 20.7 | 795 | -- | -- |
| 255.62 | 0.745 | 4.01 | -0.533 | 0.512 | 1.86 | -0.904 | -- | 0.853 | 16.8 | 16.03 | 848 | -- | -- |
| 250.25 | 0.737 | 4.07 | -1.19 | 0.372 | 1.78 | -- | -3.35 | 0.661 | 16.4 | 20.7 | 789 | -- | -- |
| 255.96 | 0.745 | 3.99 | -0.499 | 0.529 | 1.99 | -- | -- | 0.858 | 16.8 | 14.7 | 888 | -- | -- |
| 252.94 | 0.741 | 4.06 | -1.09 | -- | 1.9 | -- | -3.34 | 0.659 | -- | 20.65 | 611 | -- | -- |
| 308.61 | 0.824 | 3.92 | 0.0125 | 0.732 | -- | -0.213 | -- | 1.17 | 19 | -- | -- | -- | -- |
| 308.72 | 0.823 | 3.92 | 0.0161 | 0.731 | -- | -- | -- | 1.17 | 19.1 | -- | -- | -- | -- |
| 262.34 | 0.754 | 3.99 | -0.532 | -- | 1.82 | -- | -- | 0.794 | -- | 18.7 | 651 | -- | -- |
| 261.99 | 0.754 | 3.97 | -- | 0.569 | 1.73 | -- | -- | 0.943 | 17.3 | 13.5 | 890 | -- | -- |
| 336.84 | 0.858 | 3.91 | 0.00171 | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
| 308.73 | 0.822 | 3.93 | -- | 0.73 | -- | -- | -- | 1.17 | 19.1 | -- | -- | -- | -- |
| 267.31 | 0.761 | 3.96 | -- | -- | 1.65 | -- | -- | 0.912 | -- | 19.3 | 608 | -- | -- |
| 336.84 | 0.857 | 3.91 | -- | -- | -- | -- | -- | 1.15 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 238.65 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 9 |
| 7 | 239.55 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 6 |
| 11 | 239.72 | wind | 5 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 20 | 240.09 | wind | 7 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 34 | 240.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 42 | 241.01 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 13 |
| 50 | 241.24 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 12 |
| 56 | 241.30 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 58 | 241.34 | wind | 5 | 43200 | > th | dose dependent | sin | 18 | NA |
| 63 | 241.44 | wind | 5 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 64 | 241.46 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 7 |
| 72 | 241.58 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 79 | 241.77 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 5 |
| 85 | 241.83 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 92 | 241.97 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 7 |
| 93 | 241.99 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 13 |
| 106 | 242.14 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 5 |
| 116 | 242.24 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 118 | 242.26 | wind | 5 | 43200 | > th | dose independent | sin | 18 | NA |
| 122 | 242.30 | wind | 7 | 43200 | > th | dose independent | rect. | 14 | 2 |
| 126 | 242.34 | wind | 5 | 43200 | > th | dose independent | rect. | 16 | 6 |
| 132 | 242.40 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 17 |
| 160 | 242.64 | wind | 5 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 163 | 242.66 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 164 | 242.66 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 17 |
| 171 | 242.79 | wind | 7 | 43200 | < th | dose independent | sin | 19 | NA |
| 178 | 242.84 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 251 | 243.44 | wind | 7 | 43200 | < th | dose independent | rect. | 7 | 14 |
| 274 | 243.64 | wind | 5 | 43200 | < th | dose independent | rect. | 16 | 6 |
| 287 | 243.73 | wind | 5 | 43200 | < th | dose independent | rect. | 10 | 6 |
| 294 | 243.76 | wind | 7 | 43200 | > th | dose independent | rect. | 6 | 15 |
| 412 | 244.38 | humidity | 80 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 533 | 244.88 | wind | 7 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 550 | 244.96 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 552 | 244.96 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 9 |
| 613 | 245.18 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 3 |
| 693 | 245.50 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 1 |
| 779 | 245.87 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 849 | 246.12 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 8 |
| 880 | 246.26 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 6 |
| 882 | 246.27 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 889 | 246.30 | wind | 5 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 917 | 246.40 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 23 |
| 922 | 246.42 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 23 |
| 931 | 246.45 | humidity | 70 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 948 | 246.52 | humidity | 60 | 43200 | < th | dose independent | rect. | 22 | 14 |
| 955 | 246.56 | wind | 9 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 966 | 246.63 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 968 | 246.63 | humidity | 60 | 43200 | < th | dose independent | rect. | 2 | 10 |
| 986 | 246.69 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 14 |
| 987 | 246.69 | temperature | 25 | 4320 | > th | dose dependent | sin | 6 | NA |
| 990 | 246.70 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 1000 | 246.73 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 7 |