Os06g0119100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os06g0119100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 244.84 | 0.735 | 8.64 | 0.968 | 0.445 | 2.09 | -0.541 | -4.8 | 0.281 | 18.1 | 26.8 | 5821 | -- | -- |
| 250.17 | 0.737 | 8.57 | 2.02 | 0.441 | 1.85 | -0.692 | -- | 0.201 | 17.7 | 23.4 | 8861 | -- | -- |
| 245.49 | 0.73 | 8.64 | 0.999 | 0.427 | 2.09 | -- | -4.7 | 0.277 | 18.1 | 26.81 | 5875 | -- | -- |
| 247.68 | 0.733 | 8.58 | 2.02 | 0.501 | 1.94 | -- | -- | 0.192 | 17.4 | 23.5 | 10009 | -- | -- |
| 250.61 | 0.737 | 8.64 | 1 | -- | 1.96 | -- | -4.27 | 0.202 | -- | 26.8 | 6325 | -- | -- |
| 358.21 | 0.887 | 8.38 | 3.08 | 0.437 | -- | -0.632 | -- | 1.02 | 18.2 | -- | -- | -- | -- |
| 359.19 | 0.888 | 8.38 | 3.09 | 0.434 | -- | -- | -- | 1.01 | 18.3 | -- | -- | -- | -- |
| 260.51 | 0.752 | 8.57 | 2 | -- | 1.92 | -- | -- | 0.127 | -- | 23.51 | 10307 | -- | -- |
| 257.11 | 0.747 | 8.65 | -- | 0.411 | 2.83 | -- | -- | -0.0865 | 18.3 | 20.5 | 26216 | -- | -- |
| 368.96 | 0.898 | 8.37 | 3.08 | -- | -- | -- | -- | 1 | -- | -- | -- | -- | -- |
| 611.02 | 1.16 | 8.46 | -- | 0.394 | -- | -- | -- | 0.669 | 18.7 | -- | -- | -- | -- |
| 266.67 | 0.761 | 8.64 | -- | -- | 2.89 | -- | -- | -0.17 | -- | 20.49 | 26267 | -- | -- |
| 619.13 | 1.16 | 8.45 | -- | -- | -- | -- | -- | 0.663 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 224.34 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 16 |
| 3 | 226.59 | humidity | 60 | 14400 | < th | dose independent | rect. | 15 | 5 |
| 4 | 226.64 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 20 | 227.10 | humidity | 70 | 14400 | < th | dose dependent | rect. | 16 | 5 |
| 32 | 227.30 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 4 |
| 36 | 227.57 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 37 | 227.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 39 | 227.62 | humidity | 60 | 14400 | > th | dose independent | rect. | 16 | 11 |
| 61 | 228.01 | humidity | 60 | 14400 | < th | dose independent | sin | 12 | NA |
| 94 | 229.31 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 96 | 229.55 | humidity | 60 | 14400 | > th | dose independent | sin | 12 | NA |
| 99 | 229.86 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 4 |
| 104 | 230.52 | temperature | 30 | 43200 | > th | dose dependent | rect. | 12 | 1 |
| 105 | 230.71 | humidity | 70 | 14400 | < th | dose dependent | sin | 12 | NA |
| 106 | 230.73 | temperature | 25 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 107 | 230.73 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 108 | 230.82 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 110 | 230.90 | temperature | 25 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 113 | 231.12 | radiation | 40 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 115 | 231.39 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 121 | 231.89 | humidity | 80 | 43200 | < th | dose independent | rect. | 21 | 11 |
| 127 | 232.38 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 145 | 232.82 | temperature | 30 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 146 | 232.84 | radiation | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 148 | 232.86 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 150 | 232.87 | temperature | 30 | 43200 | > th | dose independent | rect. | 8 | 9 |
| 164 | 232.88 | temperature | 30 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 184 | 232.93 | temperature | 30 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 185 | 232.93 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 187 | 232.96 | temperature | 30 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 194 | 232.96 | temperature | 30 | 43200 | < th | dose independent | rect. | 22 | 19 |
| 201 | 232.99 | temperature | 30 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 230 | 233.18 | humidity | 80 | 43200 | < th | dose dependent | rect. | 21 | 11 |
| 265 | 233.24 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 268 | 233.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 272 | 233.33 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 277 | 233.39 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 282 | 233.45 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 23 |
| 285 | 233.49 | temperature | 30 | 43200 | > th | dose independent | rect. | 12 | 23 |
| 288 | 233.51 | temperature | 30 | 43200 | < th | dose independent | sin | 3 | NA |
| 305 | 233.56 | temperature | 30 | 43200 | > th | dose independent | sin | 3 | NA |
| 306 | 233.56 | radiation | 40 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 317 | 233.62 | temperature | 30 | 43200 | > th | dose dependent | rect. | 8 | 7 |
| 343 | 233.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 363 | 233.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 422 | 234.02 | temperature | 30 | 43200 | < th | dose independent | rect. | 8 | 16 |
| 424 | 234.02 | temperature | 30 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 435 | 234.03 | temperature | 30 | 43200 | < th | dose independent | no | NA | NA |
| 532 | 234.11 | temperature | 30 | 43200 | > th | dose independent | no | NA | NA |
| 635 | 234.15 | temperature | 30 | 43200 | < th | dose independent | rect. | 12 | 11 |
| 740 | 234.36 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 742 | 234.38 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 743 | 234.38 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 780 | 234.48 | radiation | 20 | 43200 | < th | dose independent | rect. | 24 | 10 |
| 790 | 234.48 | temperature | 25 | 43200 | > th | dose dependent | rect. | 21 | 14 |
| 791 | 234.49 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 5 |
| 800 | 234.50 | radiation | 20 | 43200 | < th | dose independent | rect. | 19 | 15 |
| 840 | 234.59 | wind | 9 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 882 | 234.68 | temperature | 25 | 43200 | > th | dose dependent | rect. | 6 | 4 |
| 894 | 234.78 | humidity | 90 | 14400 | > th | dose independent | rect. | 20 | 4 |
| 908 | 234.85 | temperature | 30 | 43200 | > th | dose dependent | sin | 6 | NA |
| 926 | 234.92 | temperature | 25 | 43200 | > th | dose dependent | sin | 8 | NA |