Os06g0118800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os06g0118800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 362.02 | 0.894 | 6.94 | -2.93 | 2.63 | 4.18 | 0.25 | -11.3 | -0.0121 | 21 | 23.91 | 2372 | -- | -- |
| 370.74 | 0.897 | 6.76 | -1.17 | 3.17 | 4.06 | 0.582 | -- | 0.0588 | 21.1 | 17.05 | 8277 | -- | -- |
| 361.79 | 0.886 | 6.94 | -2.91 | 2.65 | 4.2 | -- | -11.4 | 0.0288 | 21 | 24.18 | 2402 | -- | -- |
| 365.44 | 0.89 | 6.79 | -1.16 | 3.11 | 4.16 | -- | -- | -0.102 | 21.1 | 16.3 | 8270 | -- | -- |
| 710.5 | 1.24 | 7.01 | -3.77 | -- | 5.41 | -- | -13.7 | -0.341 | -- | 24.2 | 2180 | -- | -- |
| 717.12 | 1.26 | 6.48 | 1.17 | 3.19 | -- | 0.144 | -- | 1.25 | 21.4 | -- | -- | -- | -- |
| 717.19 | 1.25 | 6.48 | 1.16 | 3.19 | -- | -- | -- | 1.25 | 21.4 | -- | -- | -- | -- |
| 682.01 | 1.22 | 6.61 | -0.435 | -- | 6.33 | -- | -- | 0.273 | -- | 8.078 | 747 | -- | -- |
| 383.53 | 0.912 | 6.73 | -- | 3.05 | 3.08 | -- | -- | 0.135 | 21.1 | 21.11 | 8192 | -- | -- |
| 1313.1 | 1.69 | 6.39 | 1.18 | -- | -- | -- | -- | 1.24 | -- | -- | -- | -- | -- |
| 752.89 | 1.28 | 6.51 | -- | 3.19 | -- | -- | -- | 1.12 | 21.4 | -- | -- | -- | -- |
| 638.27 | 1.18 | 6.57 | -- | -- | 4.89 | -- | -- | 0.436 | -- | 22.18 | 775 | -- | -- |
| 1349.89 | 1.71 | 6.42 | -- | -- | -- | -- | -- | 1.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 349.80 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 7 |
| 9 | 358.03 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 19 | 359.94 | radiation | 1 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 29 | 360.23 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 33 | 360.94 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 6 |
| 46 | 363.53 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 52 | 363.85 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 66 | 364.82 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 79 | 365.86 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 6 |
| 86 | 366.34 | radiation | 30 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 91 | 366.52 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 130 | 369.11 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 10 |
| 160 | 371.23 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 7 |
| 168 | 371.47 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 172 | 371.60 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 174 | 371.64 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 183 | 372.37 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 193 | 373.62 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 234 | 375.69 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 239 | 375.96 | wind | 7 | 43200 | < th | dose independent | sin | 3 | NA |
| 242 | 376.01 | temperature | 25 | 4320 | < th | dose independent | rect. | 7 | 5 |
| 244 | 376.23 | wind | 7 | 43200 | > th | dose independent | sin | 2 | NA |
| 268 | 377.74 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 270 | 377.77 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 271 | 377.82 | temperature | 20 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 272 | 377.89 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 299 | 379.33 | radiation | 1 | 43200 | < th | dose dependent | rect. | 21 | 8 |
| 304 | 379.51 | temperature | 25 | 4320 | > th | dose independent | rect. | 7 | 5 |
| 314 | 379.78 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 334 | 380.12 | wind | 7 | 43200 | > th | dose independent | rect. | 20 | 19 |
| 353 | 380.77 | humidity | 90 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 380 | 381.42 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 398 | 381.81 | wind | 7 | 43200 | < th | dose independent | rect. | 20 | 19 |
| 409 | 382.06 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 418 | 382.25 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 427 | 382.55 | humidity | 90 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 450 | 382.90 | temperature | 20 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 456 | 383.02 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 16 |
| 469 | 383.27 | wind | 5 | 43200 | > th | dose dependent | sin | 1 | NA |
| 475 | 383.42 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 3 |
| 480 | 383.51 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 487 | 383.58 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 520 | 384.03 | humidity | 90 | 43200 | > th | dose independent | rect. | 17 | 7 |
| 528 | 384.18 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 4 |
| 531 | 384.23 | temperature | 20 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 533 | 384.26 | temperature | 20 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 534 | 384.27 | temperature | 20 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 536 | 384.30 | temperature | 20 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 554 | 384.52 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 560 | 384.59 | temperature | 20 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 575 | 384.76 | temperature | 20 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 604 | 384.98 | temperature | 20 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 607 | 385.01 | temperature | 20 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 611 | 385.05 | temperature | 20 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 640 | 385.30 | temperature | 20 | 43200 | > th | dose independent | rect. | 23 | 10 |
| 649 | 385.34 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 16 |
| 656 | 385.37 | temperature | 20 | 43200 | < th | dose independent | sin | 10 | NA |
| 713 | 385.76 | temperature | 20 | 43200 | > th | dose independent | sin | 10 | NA |
| 722 | 385.80 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 761 | 386.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 9 |
| 852 | 386.75 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 870 | 386.86 | temperature | 25 | 14400 | > th | dose independent | rect. | 23 | 16 |
| 875 | 386.88 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 3 |
| 916 | 387.16 | temperature | 25 | 14400 | < th | dose independent | rect. | 24 | 15 |
| 944 | 387.37 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 947 | 387.40 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 953 | 387.45 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |