Os06g0118700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Peptidase A1, pepsin family protein.
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Os06g0118700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Peptidase A1, pepsin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 532 | 1.08 | 9.92 | -5.06 | 0.0275 | -6.61 | 2.56 | -10.2 | -0.584 | 6.71 | 1.208 | 12902 | -- | -- |
| 709.88 | 1.24 | 10.2 | -6.58 | 0.00145 | -5.08 | -0.778 | -- | -1.01 | 19 | 1.67 | 11419 | -- | -- |
| 547.43 | 1.09 | 9.93 | -5.04 | 0.054 | -6.56 | -- | -10.1 | -0.601 | 5.57 | 1.21 | 12923 | -- | -- |
| 622.12 | 1.16 | 10.2 | -6.82 | 0.249 | -5.07 | -- | -- | -1.26 | 6.82 | 1.612 | 15734 | -- | -- |
| 547.65 | 1.09 | 9.93 | -5 | -- | -6.55 | -- | -10.2 | -0.595 | -- | 1.207 | 12923 | -- | -- |
| 1357.9 | 1.73 | 9.87 | -5.51 | 0.572 | -- | 1.16 | -- | 0.436 | 2.35 | -- | -- | -- | -- |
| 1360.41 | 1.73 | 9.88 | -5.54 | 0.595 | -- | -- | -- | 0.432 | 0.962 | -- | -- | -- | -- |
| 613.33 | 1.15 | 10.3 | -7.04 | -- | -5.32 | -- | -- | -1.36 | -- | 1.61 | 15742 | -- | -- |
| 1588.58 | 1.86 | 10 | -- | 0.233 | -5.15 | -- | -- | -0.224 | 6.19 | 6.98 | 9887 | -- | -- |
| 1382.43 | 1.74 | 9.87 | -5.52 | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
| 2170.28 | 2.18 | 9.74 | -- | 0.508 | -- | -- | -- | 1.05 | 0.495 | -- | -- | -- | -- |
| 1588.93 | 1.86 | 10 | -- | -- | -5.06 | -- | -- | -0.201 | -- | 6.99 | 9938 | -- | -- |
| 2186.5 | 2.18 | 9.73 | -- | -- | -- | -- | -- | 1.06 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 493.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 2 | 493.35 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 4 | 494.20 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 11 |
| 6 | 496.70 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 17 | 497.80 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 23 | 500.16 | radiation | 40.0 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 29 | 501.02 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 15 |
| 37 | 502.05 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 47 | 505.16 | radiation | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 51 | 505.47 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 67 | 509.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 70 | 509.56 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 4 |
| 72 | 509.60 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 7 |
| 76 | 509.67 | radiation | 10.0 | 14400 | < th | dose independent | rect. | 15 | 12 |
| 83 | 510.03 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 85 | 510.11 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 4 |
| 93 | 510.47 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 9 |
| 114 | 511.99 | radiation | 10.0 | 14400 | < th | dose independent | sin | 15 | NA |
| 145 | 516.37 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 13 |
| 169 | 520.97 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 173 | 522.06 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 174 | 522.06 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 175 | 522.06 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 5 |
| 180 | 522.69 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 10 |
| 181 | 522.74 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 17 | 13 |
| 213 | 524.63 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 19 |
| 246 | 526.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 11 |
| 277 | 527.58 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 16 | 19 |
| 278 | 527.77 | radiation | 1.0 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 312 | 528.59 | radiation | 1.0 | 14400 | < th | dose independent | sin | 11 | NA |
| 313 | 528.61 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 4 |
| 317 | 528.80 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 20 |
| 322 | 528.94 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 346 | 530.09 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 16 |
| 351 | 530.29 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 396 | 530.82 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 8 | 22 |
| 409 | 531.11 | precipitation | 0.1 | 43200 | > th | dose dependent | sin | 17 | NA |
| 415 | 531.34 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 8 | 16 |
| 416 | 531.44 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 4 | 6 |
| 442 | 532.10 | radiation | 1.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 468 | 532.67 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 475 | 532.84 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 504 | 533.37 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 5 | 6 |
| 509 | 533.55 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 510 | 533.55 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 18 | 19 |
| 522 | 533.81 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 16 | 14 |
| 587 | 534.86 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 618 | 535.27 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 14 |
| 620 | 535.30 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 17 |
| 629 | 535.39 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 17 |
| 639 | 535.42 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 22 |
| 671 | 535.52 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 679 | 535.56 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 22 |
| 695 | 535.60 | radiation | 1.0 | 14400 | < th | dose independent | no | NA | NA |
| 736 | 536.13 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 8 | 22 |
| 766 | 536.44 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 776 | 536.55 | radiation | 1.0 | 14400 | < th | dose dependent | sin | 14 | NA |
| 782 | 536.63 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 5 | 6 |
| 805 | 536.91 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 5 | 6 |
| 878 | 538.07 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 879 | 538.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 886 | 538.14 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 20 |
| 890 | 538.19 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 11 | 8 |
| 904 | 538.50 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 906 | 538.51 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 18 |
| 926 | 538.81 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 2 | 9 |
| 980 | 539.14 | humidity | 90.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 984 | 539.14 | radiation | 1.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 992 | 539.17 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 21 | 14 |