FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os06g0118000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase A1, pepsin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0489) R2 : 0.0171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.29 (0.103) R2dN8 : 0.0221 R2N8 : 0.0171
σ : 0.921
deviance : 389.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
367.73 0.901 3.15 0.19 0.593 0.445 1.62 1.4 -0.375 2.99 89.97 30 -- --
372.77 0.899 3.13 0.0295 0.566 0.492 0.793 -- -0.417 3.25 90 6 -- --
373.73 0.9 3.14 0.0936 0.531 0.401 -- 0.759 -0.379 2.85 89 29 -- --
374.19 0.901 3.14 0.0444 0.563 0.48 -- -- -0.416 2.85 90.02 6 -- --
385.06 0.914 3.12 0.124 -- 0.14 -- 0.88 -0.302 -- 89.59 40 -- --
386.05 0.921 3.11 -0.0308 0.202 -- 0.634 -- -0.295 4.47 -- -- -- --
386.57 0.921 3.11 -0.037 0.221 -- -- -- -0.299 2.74 -- -- -- --
386.05 0.915 3.12 0.0106 -- 0.201 -- -- -0.339 -- 90.9 9 -- --
374.24 0.901 3.14 -- 0.561 0.476 -- -- -0.42 2.85 90.16 6 -- --
389.41 0.922 3.11 -0.0276 -- -- -- -- -0.293 -- -- -- -- --
386.61 0.92 3.11 -- 0.22 -- -- -- -0.295 2.73 -- -- -- --
386.04 0.915 3.12 -- -- 0.201 -- -- -0.34 -- 90.79 8 -- --
389.43 0.921 3.11 -- -- -- -- -- -0.29 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 357.39 wind 5 90 > th dose independent rect. 6 1
2 357.39 wind 5 90 > th dose dependent rect. 6 1
8 360.80 humidity 90 30 < th dose independent rect. 21 12
9 360.93 humidity 80 90 < th dose independent rect. 5 2
10 361.04 wind 3 10 > th dose independent rect. 5 3
13 361.23 humidity 90 30 < th dose independent rect. 12 21
26 362.22 humidity 80 90 < th dose dependent rect. 5 2
34 363.06 humidity 90 30 < th dose independent rect. 23 10
35 363.08 humidity 90 30 < th dose independent rect. 18 15
41 363.29 wind 5 10 > th dose independent rect. 7 1
67 364.38 humidity 90 30 < th dose independent sin 11 NA
70 364.42 humidity 90 30 < th dose independent rect. 5 22
74 364.63 humidity 80 10 < th dose independent rect. 5 3
81 364.76 radiation 20 90 > th dose independent rect. 6 1
95 364.76 radiation 20 90 > th dose dependent rect. 6 1
138 365.77 humidity 90 30 > th dose independent rect. 5 23
148 366.06 humidity 80 10 < th dose independent rect. 5 1
153 366.06 humidity 80 10 < th dose dependent rect. 5 1
158 366.07 humidity 90 30 < th dose independent rect. 12 15
172 366.28 humidity 90 30 > th dose independent sin 11 NA
179 366.45 atmosphere 1000 30 < th dose independent rect. 1 9
206 366.90 humidity 90 90 < th dose dependent rect. 21 11
233 367.39 humidity 90 30 > th dose independent rect. 18 14
242 367.50 atmosphere 1000 90 < th dose independent rect. 7 3
249 367.59 humidity 90 30 < th dose independent rect. 21 23
250 367.60 atmosphere 1000 10 < th dose independent rect. 6 5
253 367.61 atmosphere 1000 10 < th dose independent rect. 8 2
254 367.61 atmosphere 1000 90 < th dose independent rect. 5 5
258 367.63 atmosphere 1000 270 < th dose independent rect. 6 1
265 367.65 atmosphere 1000 90 < th dose independent rect. 8 1
282 367.74 humidity 90 30 < th dose independent no NA NA
286 367.77 humidity 80 30 > th dose dependent rect. 5 23
295 367.84 humidity 90 30 > th dose independent rect. 15 17
341 368.06 humidity 80 90 > th dose dependent sin 12 NA
347 368.17 humidity 90 30 > th dose independent rect. 18 22
349 368.17 humidity 90 30 < th dose independent rect. 23 23
350 368.17 atmosphere 1000 1440 < th dose dependent rect. 10 1
353 368.18 humidity 90 30 < th dose independent rect. 18 21
383 368.33 atmosphere 1000 90 < th dose dependent rect. 20 8
388 368.38 humidity 90 30 < th dose independent rect. 16 23
401 368.47 humidity 80 30 > th dose dependent rect. 17 17
404 368.49 humidity 90 30 < th dose independent rect. 18 23
440 368.61 humidity 90 30 > th dose independent rect. 21 23
443 368.64 humidity 90 30 > th dose independent rect. 23 23
444 368.65 humidity 90 30 > th dose independent no NA NA
456 368.67 atmosphere 1000 90 < th dose dependent rect. 9 1
458 368.68 humidity 90 30 > th dose independent rect. 7 23
462 368.70 humidity 90 30 < th dose independent rect. 21 6
467 368.70 humidity 80 30 > th dose dependent rect. 17 15
488 368.77 humidity 90 30 < th dose independent rect. 7 23
517 368.86 humidity 80 90 > th dose dependent rect. 7 23
524 368.90 humidity 90 30 > th dose independent rect. 1 23
574 369.07 atmosphere 1000 30 < th dose dependent rect. 6 5
576 369.09 humidity 90 30 < th dose independent rect. 18 9
599 369.14 humidity 90 30 < th dose independent rect. 1 23
601 369.15 atmosphere 1000 270 < th dose dependent rect. 6 1
641 369.24 humidity 90 30 < th dose independent rect. 21 18
739 369.45 humidity 80 90 > th dose dependent rect. 9 23
766 369.52 temperature 20 270 < th dose dependent rect. 4 1
805 369.61 humidity 80 30 > th dose dependent rect. 1 23
823 369.68 wind 9 30 > th dose dependent rect. 11 1
837 369.71 humidity 80 30 > th dose dependent rect. 19 23
844 369.73 humidity 80 30 > th dose dependent rect. 11 23
846 369.74 humidity 80 30 > th dose dependent no NA NA
877 369.86 humidity 80 30 > th dose dependent rect. 23 23
921 369.96 humidity 80 30 > th dose dependent rect. 21 23
965 370.04 humidity 90 30 < th dose independent rect. 23 7