Os06g0117500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF594 family protein.
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Os06g0117500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF594 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 102.73 | 0.476 | 8.94 | -0.404 | 2.39 | -2.89 | 0.0879 | 0.253 | 0.374 | 6.54 | 0.6818 | 858 | -- | -- |
| 102.67 | 0.472 | 8.94 | -0.393 | 2.39 | -2.89 | 0.26 | -- | 0.376 | 6.58 | 0.71 | 863 | -- | -- |
| 102.61 | 0.472 | 8.94 | -0.41 | 2.37 | -2.88 | -- | 0.351 | 0.374 | 6.62 | 0.7245 | 869 | -- | -- |
| 101.99 | 0.47 | 8.93 | -0.379 | 2.33 | -2.91 | -- | -- | 0.36 | 7.02 | 0.9595 | 933 | -- | -- |
| 122.52 | 0.516 | 9.01 | -0.396 | -- | -0.917 | -- | -0.446 | 0.306 | -- | 0.5898 | 2874 | -- | -- |
| 118.81 | 0.511 | 8.96 | -0.104 | 0.393 | -- | 0.161 | -- | 0.506 | 5.18 | -- | -- | -- | -- |
| 118.87 | 0.511 | 8.96 | -0.104 | 0.395 | -- | -- | -- | 0.505 | 5.26 | -- | -- | -- | -- |
| 121.4 | 0.513 | 9.01 | -0.314 | -- | -0.784 | -- | -- | 0.311 | -- | 0.84 | 2869 | -- | -- |
| 105.53 | 0.478 | 8.93 | -- | 1.97 | -2.42 | -- | -- | 0.427 | 6.97 | 0.9899 | 925 | -- | -- |
| 127.01 | 0.527 | 8.97 | -0.0898 | -- | -- | -- | -- | 0.515 | -- | -- | -- | -- | -- |
| 119.15 | 0.511 | 8.96 | -- | 0.393 | -- | -- | -- | 0.517 | 5.27 | -- | -- | -- | -- |
| 121.28 | 0.513 | 8.96 | -- | -- | 0.381 | -- | -- | 0.55 | -- | 18.5 | 565 | -- | -- |
| 127.22 | 0.526 | 8.96 | -- | -- | -- | -- | -- | 0.525 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 102.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 3 | 102.86 | radiation | 1 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 7 | 102.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 12 |
| 10 | 103.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 7 | 20 |
| 15 | 103.29 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 16 | 103.32 | radiation | 1 | 720 | < th | dose dependent | sin | 20 | NA |
| 29 | 103.43 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 134 | 103.92 | radiation | 1 | 720 | < th | dose independent | sin | 20 | NA |
| 140 | 103.94 | radiation | 1 | 720 | < th | dose independent | rect. | 9 | 10 |
| 142 | 103.95 | radiation | 1 | 720 | < th | dose independent | rect. | 10 | 17 |
| 191 | 104.09 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 12 |
| 196 | 104.10 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 22 | 13 |
| 204 | 104.11 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 23 | 13 |
| 221 | 104.15 | atmosphere | 1015 | 14400 | < th | dose dependent | sin | 5 | NA |
| 233 | 104.16 | atmosphere | 995 | 14400 | > th | dose dependent | sin | 5 | NA |
| 241 | 104.17 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 8 |
| 272 | 104.20 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 23 | 1 |
| 303 | 104.24 | radiation | 1 | 720 | < th | dose independent | rect. | 7 | 20 |
| 452 | 104.44 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 488 | 104.49 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 570 | 104.58 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 639 | 104.63 | atmosphere | 1015 | 14400 | < th | dose dependent | no | NA | NA |
| 726 | 104.69 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 4 | 20 |
| 766 | 104.72 | radiation | 1 | 720 | > th | dose independent | sin | 20 | NA |
| 829 | 104.76 | atmosphere | 995 | 14400 | > th | dose dependent | no | NA | NA |