Os06g0117200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os06g0117200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 383.85 | 0.921 | 8.26 | 0.611 | 0.583 | 2.01 | 0.365 | 5.14 | -1.23 | 10.2 | 67 | 6271 | -- | -- |
| 418.19 | 0.952 | 8.26 | 0.38 | 0.538 | 2.24 | 0.577 | -- | -1.29 | 9.76 | 68.15 | 4763 | -- | -- |
| 384.38 | 0.913 | 8.26 | 0.623 | 0.578 | 2.02 | -- | 5.13 | -1.23 | 10.2 | 67.03 | 6263 | -- | -- |
| 416.71 | 0.951 | 8.21 | 0.373 | 0.586 | 2.09 | -- | -- | -1.18 | 9.34 | 67.09 | 4760 | -- | -- |
| 403.95 | 0.936 | 8.28 | 0.603 | -- | 1.97 | -- | 5.11 | -1.23 | -- | 67.23 | 6224 | -- | -- |
| 497.04 | 1.05 | 8.23 | 0.343 | 0.487 | -- | 0.122 | -- | -1.2 | 11 | -- | -- | -- | -- |
| 497.1 | 1.04 | 8.23 | 0.348 | 0.487 | -- | -- | -- | -1.2 | 11 | -- | -- | -- | -- |
| 433.03 | 0.969 | 8.22 | 0.403 | -- | 2.12 | -- | -- | -1.11 | -- | 67.18 | 4696 | -- | -- |
| 420.79 | 0.955 | 8.22 | -- | 0.561 | 2.13 | -- | -- | -1.16 | 9.45 | 67.34 | 4760 | -- | -- |
| 511.84 | 1.06 | 8.24 | 0.337 | -- | -- | -- | -- | -1.2 | -- | -- | -- | -- | -- |
| 500.29 | 1.05 | 8.24 | -- | 0.484 | -- | -- | -- | -1.24 | 11 | -- | -- | -- | -- |
| 437.3 | 0.974 | 8.23 | -- | -- | 2.1 | -- | -- | -1.16 | -- | 67.56 | 4696 | -- | -- |
| 514.84 | 1.06 | 8.25 | -- | -- | -- | -- | -- | -1.24 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 378.84 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 2 | 378.84 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 378.90 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 4 | 378.90 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 5 | 381.88 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 7 | 5 |
| 7 | 382.63 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 8 | 382.78 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 3 |
| 9 | 383.18 | wind | 5.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 11 | 383.24 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 12 | 383.24 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 3 |
| 20 | 384.07 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 7 | 5 |
| 24 | 384.82 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 3 |
| 26 | 384.94 | wind | 3.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 34 | 385.70 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 6 | 6 |
| 35 | 385.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 13 |
| 38 | 385.81 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 13 |
| 40 | 385.81 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 13 |
| 43 | 386.02 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 13 |
| 47 | 386.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 49 | 386.39 | wind | 3.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 51 | 386.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 16 |
| 52 | 386.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 16 |
| 54 | 386.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 5 |
| 57 | 386.82 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 59 | 386.83 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 60 | 386.85 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 16 |
| 61 | 386.88 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 62 | 386.88 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 73 | 387.18 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 74 | 387.23 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 77 | 387.27 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 2 |
| 84 | 387.44 | wind | 3.0 | 14400 | < th | dose independent | rect. | 24 | 5 |
| 93 | 387.56 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 6 |
| 110 | 387.96 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 111 | 387.96 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 112 | 387.96 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 133 | 388.55 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 151 | 388.86 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 6 |
| 152 | 388.90 | wind | 3.0 | 14400 | < th | dose independent | rect. | 3 | 1 |
| 190 | 389.46 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 11 | 23 |
| 215 | 389.89 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 220 | 389.93 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 10 | 5 |
| 240 | 390.08 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 252 | 390.22 | wind | 3.0 | 14400 | > th | dose independent | rect. | 3 | 3 |
| 263 | 390.35 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 5 |
| 277 | 390.60 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 2 | NA |
| 281 | 390.67 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 316 | 391.13 | humidity | 60.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 330 | 391.23 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 346 | 391.37 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 412 | 391.94 | wind | 9.0 | 14400 | < th | dose independent | rect. | 6 | 5 |
| 413 | 391.94 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 23 |
| 414 | 391.94 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 7 |
| 426 | 392.10 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 429 | 392.12 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 431 | 392.12 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 445 | 392.14 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 6 |
| 462 | 392.16 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 11 | 22 |
| 472 | 392.20 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 546 | 392.48 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 654 | 392.74 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 7 |
| 655 | 392.74 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 8 |
| 656 | 392.74 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 737 | 393.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 14 |
| 746 | 393.22 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 19 |
| 773 | 393.36 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 775 | 393.36 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 23 |
| 777 | 393.37 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 8 | 10 |
| 813 | 393.54 | humidity | 60.0 | 14400 | > th | dose independent | sin | 19 | NA |
| 819 | 393.59 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 16 | 1 |
| 872 | 393.73 | humidity | 70.0 | 14400 | < th | dose dependent | no | NA | NA |
| 951 | 393.79 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 8 | 10 |
| 955 | 393.80 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 23 | 19 |
| 961 | 393.81 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 974 | 393.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 15 |