Os06g0116100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to GAMYB-binding protein.
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Os06g0116100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to GAMYB-binding protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.87 | 0.311 | 13.2 | 0.119 | 0.376 | -1.01 | -0.27 | 3.07 | 0.308 | 14.8 | 30.31 | 321 | -- | -- |
| 43.85 | 0.308 | 13.3 | -0.112 | 0.353 | -0.686 | -0.289 | -- | 0.311 | 14.8 | 30.3 | 437 | -- | -- |
| 43.83 | 0.308 | 13.2 | 0.131 | 0.363 | -1.08 | -- | 3.32 | 0.299 | 15 | 30.4 | 438 | -- | -- |
| 44.04 | 0.309 | 13.3 | -0.121 | 0.364 | -0.71 | -- | -- | 0.3 | 15 | 30.38 | 437 | -- | -- |
| 50.66 | 0.331 | 13.2 | 0.16 | -- | -1.04 | -- | 4.17 | 0.3 | -- | 30.5 | 507 | -- | -- |
| 54.27 | 0.345 | 13.2 | -0.201 | 0.266 | -- | -0.304 | -- | 0.358 | 13 | -- | -- | -- | -- |
| 54.62 | 0.346 | 13.2 | -0.213 | 0.267 | -- | -- | -- | 0.355 | 12.6 | -- | -- | -- | -- |
| 49.91 | 0.329 | 13.3 | -0.133 | -- | -0.593 | -- | -- | 0.279 | -- | 30.3 | 705 | -- | -- |
| 44.41 | 0.31 | 13.3 | -- | 0.374 | -0.731 | -- | -- | 0.311 | 15 | 30.4 | 437 | -- | -- |
| 59.08 | 0.359 | 13.3 | -0.222 | -- | -- | -- | -- | 0.351 | -- | -- | -- | -- | -- |
| 55.81 | 0.349 | 13.2 | -- | 0.27 | -- | -- | -- | 0.379 | 12.6 | -- | -- | -- | -- |
| 50.32 | 0.33 | 13.3 | -- | -- | -0.601 | -- | -- | 0.298 | -- | 30.3 | 733 | -- | -- |
| 60.38 | 0.363 | 13.2 | -- | -- | -- | -- | -- | 0.376 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 41.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 24 | 20 |
| 2 | 41.84 | temperature | 15 | 270 | > th | dose dependent | rect. | 1 | 18 |
| 22 | 42.52 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 16 |
| 33 | 42.60 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 15 |
| 42 | 42.78 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 21 |
| 47 | 42.83 | temperature | 30 | 270 | < th | dose independent | rect. | 5 | 22 |
| 48 | 42.84 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 19 |
| 54 | 42.92 | temperature | 30 | 270 | < th | dose independent | rect. | 18 | 23 |
| 57 | 42.93 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 17 |
| 84 | 43.21 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 1 |
| 96 | 43.39 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 11 |
| 100 | 43.40 | temperature | 30 | 270 | < th | dose independent | sin | 17 | NA |
| 112 | 43.51 | temperature | 30 | 270 | > th | dose independent | sin | 17 | NA |
| 124 | 43.56 | temperature | 15 | 270 | > th | dose dependent | rect. | 10 | 10 |
| 137 | 43.66 | temperature | 30 | 270 | > th | dose independent | rect. | 11 | 8 |
| 204 | 43.82 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 5 |
| 235 | 43.87 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 3 |
| 250 | 43.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 9 |
| 269 | 43.99 | humidity | 80 | 270 | < th | dose dependent | sin | 16 | NA |
| 305 | 44.12 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 308 | 44.13 | temperature | 25 | 270 | > th | dose dependent | sin | 19 | NA |
| 310 | 44.15 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 9 |
| 322 | 44.17 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 21 |
| 323 | 44.18 | temperature | 30 | 270 | > th | dose independent | rect. | 14 | 23 |
| 325 | 44.18 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 15 |
| 327 | 44.19 | humidity | 80 | 270 | < th | dose dependent | rect. | 12 | 13 |
| 359 | 44.30 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 461 | 44.62 | temperature | 25 | 270 | > th | dose dependent | rect. | 11 | 18 |
| 477 | 44.66 | temperature | 30 | 720 | < th | dose independent | rect. | 14 | 2 |
| 485 | 44.68 | temperature | 30 | 270 | > th | dose independent | no | NA | NA |
| 515 | 44.68 | humidity | 60 | 270 | > th | dose independent | rect. | 7 | 17 |
| 594 | 44.70 | temperature | 30 | 270 | < th | dose independent | no | NA | NA |
| 608 | 44.72 | temperature | 20 | 30 | > th | dose dependent | rect. | 12 | 21 |
| 609 | 44.73 | humidity | 50 | 270 | > th | dose independent | rect. | 4 | 23 |
| 657 | 44.79 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 670 | 44.81 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 16 | 2 |
| 673 | 44.81 | temperature | 25 | 10 | > th | dose dependent | sin | 15 | NA |
| 683 | 44.82 | temperature | 30 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 698 | 44.85 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 19 |
| 700 | 44.85 | temperature | 25 | 270 | > th | dose dependent | rect. | 15 | 3 |
| 731 | 44.90 | humidity | 60 | 270 | < th | dose independent | rect. | 12 | 7 |
| 805 | 44.97 | humidity | 60 | 270 | < th | dose independent | sin | 16 | NA |
| 806 | 44.97 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 10 |
| 810 | 44.97 | temperature | 30 | 720 | > th | dose dependent | sin | 2 | NA |
| 834 | 44.98 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 835 | 44.98 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 12 |
| 850 | 45.00 | temperature | 15 | 270 | > th | dose dependent | sin | 21 | NA |
| 947 | 45.04 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 23 |
| 955 | 45.05 | temperature | 30 | 720 | > th | dose independent | sin | 0 | NA |
| 957 | 45.05 | temperature | 30 | 720 | < th | dose independent | sin | 3 | NA |