Os06g0111800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to CSLD2 (Fragment).
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Os06g0111800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to CSLD2 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.74 | 0.378 | 9.25 | 0.279 | 1.05 | -1.23 | 0.256 | -0.0014 | 0.261 | 22.8 | 20.94 | 10 | -- | -- |
| 64.61 | 0.377 | 9.25 | 0.278 | 1.05 | -1.24 | 0.252 | -- | 0.261 | 22.8 | 20.94 | 10 | -- | -- |
| 64.85 | 0.378 | 9.25 | 0.258 | 1.05 | -1.21 | -- | 0.165 | 0.258 | 22.8 | 20.94 | 10 | -- | -- |
| 64.87 | 0.378 | 9.25 | 0.266 | 1.05 | -1.25 | -- | -- | 0.259 | 22.9 | 20.94 | 10 | -- | -- |
| 115.6 | 0.501 | 9.24 | 0.234 | -- | -1.29 | -- | -0.341 | 0.164 | -- | 22.96 | 752 | -- | -- |
| 76.91 | 0.411 | 9.23 | 0.488 | 0.958 | -- | 0.362 | -- | 0.36 | 22.6 | -- | -- | -- | -- |
| 77.45 | 0.412 | 9.23 | 0.473 | 0.956 | -- | -- | -- | 0.359 | 22.6 | -- | -- | -- | -- |
| 109.75 | 0.488 | 9.26 | 0.16 | -- | -1.22 | -- | -- | 0.153 | -- | 29.59 | 793 | -- | -- |
| 66.58 | 0.382 | 9.26 | -- | 1.06 | -1.39 | -- | -- | 0.221 | 22.9 | 20.94 | 10 | -- | -- |
| 133.67 | 0.54 | 9.2 | 0.491 | -- | -- | -- | -- | 0.364 | -- | -- | -- | -- | -- |
| 83.35 | 0.427 | 9.24 | -- | 0.959 | -- | -- | -- | 0.307 | 22.6 | -- | -- | -- | -- |
| 110.18 | 0.489 | 9.26 | -- | -- | -1.27 | -- | -- | 0.0914 | -- | 29.4 | 793 | -- | -- |
| 140.03 | 0.552 | 9.21 | -- | -- | -- | -- | -- | 0.31 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.77 | temperature | 20.0 | 90 | > th | dose independent | rect. | 14 | 16 |
| 2 | 60.77 | temperature | 20.0 | 270 | > th | dose independent | rect. | 12 | 18 |
| 16 | 61.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 11 | 21 |
| 33 | 62.80 | temperature | 20.0 | 90 | > th | dose independent | sin | 13 | NA |
| 37 | 62.97 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 14 |
| 39 | 63.04 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 40 | 63.06 | temperature | 20.0 | 270 | < th | dose independent | rect. | 11 | 16 |
| 42 | 63.07 | temperature | 20.0 | 270 | > th | dose independent | sin | 15 | NA |
| 47 | 63.12 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 12 |
| 65 | 63.28 | temperature | 20.0 | 90 | < th | dose independent | sin | 14 | NA |
| 77 | 63.38 | temperature | 20.0 | 270 | < th | dose independent | sin | 16 | NA |
| 102 | 63.56 | temperature | 20.0 | 90 | < th | dose independent | rect. | 7 | 22 |
| 115 | 63.66 | temperature | 20.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 130 | 63.78 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 14 |
| 143 | 63.88 | temperature | 20.0 | 10 | < th | dose independent | sin | 13 | NA |
| 158 | 63.95 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 162 | 63.98 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 163 | 63.99 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 16 |
| 207 | 64.22 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 16 |
| 213 | 64.25 | temperature | 20.0 | 720 | > th | dose independent | rect. | 10 | 14 |
| 225 | 64.32 | temperature | 20.0 | 90 | < th | dose independent | rect. | 11 | 22 |
| 226 | 64.32 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 13 |
| 238 | 64.33 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 254 | 64.40 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 20 |
| 263 | 64.43 | temperature | 20.0 | 90 | < th | dose independent | rect. | 13 | 22 |
| 287 | 64.51 | temperature | 20.0 | 10 | < th | dose independent | rect. | 6 | 23 |
| 300 | 64.56 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 18 |
| 307 | 64.57 | temperature | 20.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 332 | 64.64 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 19 |
| 337 | 64.65 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 18 |
| 345 | 64.67 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 15 | 19 |
| 385 | 64.77 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 16 |
| 391 | 64.80 | temperature | 20.0 | 90 | > th | dose independent | rect. | 7 | 23 |
| 432 | 64.88 | temperature | 20.0 | 90 | > th | dose independent | no | NA | NA |
| 433 | 64.88 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 8 |
| 437 | 64.88 | temperature | 20.0 | 720 | > th | dose independent | rect. | 7 | 17 |
| 459 | 64.94 | temperature | 20.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 479 | 64.97 | temperature | 20.0 | 90 | < th | dose independent | rect. | 21 | 23 |
| 483 | 64.98 | temperature | 20.0 | 90 | < th | dose independent | no | NA | NA |
| 485 | 64.98 | temperature | 20.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 511 | 65.03 | temperature | 20.0 | 270 | < th | dose dependent | sin | 18 | NA |
| 513 | 65.04 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 19 |
| 545 | 65.09 | temperature | 20.0 | 10 | > th | dose independent | rect. | 12 | 23 |
| 566 | 65.14 | temperature | 20.0 | 720 | > th | dose independent | rect. | 14 | 10 |
| 569 | 65.14 | temperature | 20.0 | 30 | < th | dose dependent | rect. | 6 | 22 |
| 619 | 65.22 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 23 |
| 626 | 65.23 | temperature | 20.0 | 10 | < th | dose independent | rect. | 14 | 22 |
| 684 | 65.31 | temperature | 20.0 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 735 | 65.38 | temperature | 20.0 | 10 | < th | dose independent | rect. | 12 | 21 |
| 770 | 65.43 | temperature | 20.0 | 90 | < th | dose independent | rect. | 1 | 23 |
| 803 | 65.48 | temperature | 20.0 | 270 | > th | dose independent | rect. | 22 | 23 |
| 890 | 65.59 | temperature | 20.0 | 90 | > th | dose independent | rect. | 1 | 23 |
| 924 | 65.63 | temperature | 20.0 | 10 | < th | dose independent | rect. | 10 | 23 |
| 937 | 65.65 | temperature | 20.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 944 | 65.66 | temperature | 20.0 | 10 | < th | dose independent | rect. | 17 | 23 |
| 946 | 65.67 | temperature | 20.0 | 10 | < th | dose independent | no | NA | NA |
| 965 | 65.68 | temperature | 20.0 | 10 | < th | dose dependent | no | NA | NA |
| 981 | 65.69 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 982 | 65.69 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 992 | 65.70 | temperature | 20.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 997 | 65.71 | temperature | 20.0 | 10 | < th | dose independent | rect. | 23 | 23 |