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Os06g0111700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0227) R2 : 0.668
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.75 (0.0582) R2dC : 0.663 R2C : 0.652
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.198 (0.0477) R2dN8 : 0.0161 R2N8 : 0.00532
σ : 0.428
deviance : 83.68
__
_____
C
peak time of C : 19.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
67.15 0.385 11.3 0.584 1.76 -0.325 0.278 -1.83 0.211 19.8 1007 4730 -- --
70.64 0.391 11.3 0.604 1.75 -0.403 0.204 -- 0.224 19.7 1007 4799 -- --
67.36 0.382 11.3 0.575 1.76 -0.323 -- -1.85 0.212 19.8 1007 4760 -- --
70.68 0.392 11.3 0.644 1.75 -0.46 -- -- 0.197 19.7 1007 4792 -- --
234.08 0.713 11.3 0.577 -- -0.412 -- -1.5 0.167 -- 1008 4431 -- --
74.31 0.404 11.3 0.596 1.76 -- 0.281 -- 0.263 19.8 -- -- -- --
74.53 0.404 11.3 0.589 1.76 -- -- -- 0.263 19.8 -- -- -- --
236.34 0.716 11.3 0.636 -- -0.522 -- -- 0.153 -- 1008 4528 -- --
81.36 0.42 11.3 -- 1.75 -0.352 -- -- 0.15 19.8 1007 4782 -- --
241.34 0.726 11.3 0.568 -- -- -- -- 0.238 -- -- -- -- --
83.68 0.428 11.3 -- 1.75 -- -- -- 0.198 19.8 -- -- -- --
246.66 0.731 11.3 -- -- -0.404 -- -- 0.108 -- 1007 4520 -- --
249.84 0.738 11.3 -- -- -- -- -- 0.175 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 61.87 temperature 20.0 270 > th dose independent rect. 21 6
3 62.04 temperature 20.0 90 > th dose independent rect. 8 21
5 62.33 temperature 10.0 90 > th dose dependent rect. 8 21
6 62.33 temperature 10.0 10 > th dose dependent rect. 9 21
9 62.59 temperature 20.0 10 > th dose independent rect. 9 21
14 62.87 humidity 90.0 30 < th dose independent rect. 1 8
18 62.97 temperature 15.0 270 > th dose dependent rect. 21 6
45 63.48 temperature 30.0 90 < th dose dependent rect. 17 16
57 63.65 atmosphere 1005.0 90 > th dose dependent rect. 5 3
59 63.69 humidity 90.0 10 < th dose independent rect. 5 4
85 64.06 temperature 20.0 10 > th dose independent rect. 22 8
88 64.10 temperature 20.0 10 > th dose independent rect. 20 10
96 64.18 precipitation 0.1 270 < th dose independent rect. 18 13
97 64.18 precipitation 0.1 270 < th dose dependent rect. 18 13
115 64.35 temperature 20.0 10 > th dose independent rect. 11 18
129 64.51 radiation 30.0 10 < th dose dependent rect. 6 3
141 64.62 radiation 20.0 10 < th dose independent rect. 6 3
144 64.66 temperature 25.0 270 < th dose independent rect. 16 15
149 64.68 radiation 30.0 10 < th dose dependent rect. 6 5
151 64.69 wind 1.0 270 > th dose independent rect. 3 4
154 64.69 temperature 15.0 30 > th dose dependent rect. 20 10
156 64.70 humidity 60.0 270 > th dose independent rect. 3 12
159 64.71 atmosphere 1005.0 10 > th dose dependent rect. 5 4
180 64.83 temperature 15.0 270 > th dose independent rect. 7 10
183 64.85 humidity 60.0 30 > th dose independent rect. 6 14
197 64.90 humidity 50.0 30 > th dose dependent rect. 6 14
200 64.91 radiation 10.0 10 < th dose dependent rect. 6 1
225 65.05 temperature 30.0 30 < th dose independent rect. 6 14
232 65.08 radiation 1.0 90 > th dose independent rect. 4 4
242 65.08 temperature 30.0 90 < th dose dependent rect. 6 1
243 65.09 temperature 20.0 10 > th dose independent rect. 24 6
256 65.15 radiation 10.0 720 < th dose independent rect. 3 4
286 65.24 humidity 80.0 10 > th dose independent rect. 20 10
316 65.35 humidity 80.0 270 > th dose independent rect. 20 7
333 65.40 humidity 60.0 90 > th dose independent rect. 5 10
336 65.41 temperature 15.0 30 > th dose dependent rect. 11 18
342 65.46 precipitation 0.1 720 < th dose independent rect. 19 20
343 65.46 precipitation 0.1 720 < th dose dependent rect. 19 20
355 65.50 temperature 30.0 270 < th dose independent rect. 3 12
359 65.51 wind 1.0 90 > th dose independent rect. 5 3
362 65.52 wind 5.0 270 < th dose independent rect. 3 4
373 65.55 temperature 30.0 10 < th dose independent rect. 7 23
374 65.55 wind 3.0 10 < th dose dependent rect. 6 1
378 65.57 radiation 30.0 720 < th dose independent rect. 3 6
379 65.57 radiation 1.0 90 > th dose dependent rect. 4 3
399 65.61 humidity 60.0 30 > th dose independent rect. 6 18
400 65.61 humidity 90.0 10 < th dose dependent rect. 9 10
403 65.62 humidity 50.0 270 > th dose independent rect. 17 14
412 65.64 atmosphere 1005.0 10 > th dose dependent rect. 3 6
423 65.65 precipitation 0.1 720 < th dose independent rect. 10 14
426 65.65 precipitation 0.1 720 < th dose dependent rect. 10 14
429 65.66 radiation 10.0 720 < th dose independent rect. 19 12
435 65.68 radiation 40.0 270 < th dose independent rect. 3 12
441 65.69 radiation 20.0 270 < th dose independent rect. 18 14
449 65.71 atmosphere 1005.0 10 > th dose independent rect. 6 3
450 65.71 precipitation 0.1 720 < th dose independent rect. 12 10
453 65.71 precipitation 0.1 720 < th dose dependent rect. 12 10
467 65.74 atmosphere 1000.0 30 > th dose independent rect. 20 10
487 65.80 temperature 30.0 10 < th dose dependent rect. 6 1
491 65.81 precipitation 0.1 270 < th dose independent rect. 7 11
496 65.81 precipitation 0.1 270 < th dose dependent rect. 7 11
517 65.88 wind 9.0 270 < th dose independent rect. 7 10
528 65.90 precipitation 0.1 270 < th dose independent rect. 3 4
531 65.90 wind 9.0 270 < th dose independent rect. 17 14
532 65.90 radiation 10.0 270 < th dose independent rect. 15 17
535 65.90 precipitation 0.1 270 < th dose dependent rect. 3 4
536 65.91 wind 9.0 4320 < th dose independent rect. 7 1
541 65.91 humidity 90.0 10 < th dose dependent rect. 9 12
543 65.91 radiation 20.0 270 < th dose dependent rect. 15 17
552 65.93 humidity 60.0 30 > th dose independent rect. 3 23
566 65.95 wind 1.0 90 > th dose independent rect. 6 1
568 65.95 atmosphere 1015.0 270 < th dose independent rect. 7 10
570 65.95 temperature 10.0 270 > th dose independent rect. 17 14
574 65.95 humidity 50.0 10 > th dose dependent rect. 6 10
577 65.96 atmosphere 1000.0 90 > th dose independent rect. 6 1
583 65.97 wind 1.0 270 > th dose independent rect. 17 14
587 65.98 temperature 20.0 720 > th dose independent rect. 15 4
595 65.99 radiation 40.0 30 < th dose independent rect. 6 18
596 65.99 radiation 40.0 90 < th dose dependent rect. 6 1
597 65.99 humidity 90.0 10 < th dose dependent rect. 2 5
607 66.00 radiation 40.0 720 < th dose dependent rect. 3 6
609 66.00 radiation 40.0 270 < th dose dependent rect. 17 14
610 66.01 radiation 1.0 90 < th dose independent sin 9 NA
611 66.01 wind 7.0 90 < th dose independent rect. 6 1
613 66.01 temperature 10.0 90 > th dose independent rect. 6 1
615 66.01 temperature 30.0 90 < th dose independent rect. 6 1
616 66.01 humidity 50.0 90 > th dose independent rect. 6 1
620 66.01 atmosphere 1015.0 90 < th dose independent rect. 6 1
622 66.01 precipitation 0.1 90 < th dose independent rect. 6 1
625 66.01 radiation 1.0 90 < th dose dependent sin 9 NA
626 66.01 precipitation 0.1 90 < th dose dependent rect. 6 1
631 66.02 radiation 1.0 270 > th dose independent rect. 7 11
633 66.02 wind 1.0 90 > th dose dependent rect. 6 1
638 66.03 wind 9.0 4320 < th dose independent rect. 15 16
644 66.03 wind 7.0 4320 > th dose dependent rect. 14 18
682 66.07 atmosphere 1000.0 270 > th dose independent rect. 7 20
703 66.10 atmosphere 995.0 14400 > th dose independent rect. 10 3
719 66.13 humidity 70.0 270 > th dose independent rect. 3 4
731 66.15 humidity 50.0 90 > th dose dependent rect. 6 1
735 66.16 temperature 30.0 90 < th dose independent rect. 5 11
745 66.18 humidity 70.0 10 > th dose independent rect. 6 3
756 66.20 radiation 10.0 720 < th dose independent rect. 21 10
769 66.21 humidity 70.0 10 > th dose dependent rect. 20 10
776 66.23 humidity 90.0 270 < th dose independent rect. 7 10
796 66.24 temperature 10.0 270 > th dose dependent sin 9 NA
800 66.25 temperature 20.0 720 > th dose independent rect. 7 14
802 66.25 precipitation 0.1 10 < th dose independent rect. 7 23
807 66.25 precipitation 0.1 10 < th dose dependent rect. 7 23
809 66.26 temperature 10.0 270 > th dose independent rect. 3 4
811 66.26 temperature 30.0 270 < th dose independent rect. 3 4
812 66.26 humidity 50.0 270 > th dose independent rect. 3 4
814 66.26 atmosphere 995.0 270 > th dose independent rect. 3 4
815 66.26 atmosphere 1015.0 270 < th dose independent rect. 3 4
822 66.26 temperature 20.0 10 > th dose dependent rect. 24 5
829 66.27 temperature 30.0 30 < th dose dependent rect. 6 3
830 66.27 humidity 50.0 30 > th dose dependent rect. 6 3
839 66.28 wind 9.0 90 < th dose dependent rect. 6 1
889 66.34 temperature 20.0 270 > th dose independent rect. 22 14
894 66.35 wind 9.0 4320 < th dose independent sin 12 NA
895 66.35 precipitation 0.1 10 < th dose independent rect. 6 3
902 66.35 precipitation 0.1 10 < th dose dependent rect. 6 3
909 66.36 temperature 20.0 270 > th dose independent sin 12 NA
911 66.36 wind 7.0 10 < th dose independent rect. 6 3
913 66.36 temperature 10.0 10 > th dose independent rect. 6 3
915 66.36 temperature 30.0 10 < th dose independent rect. 6 3
916 66.36 humidity 50.0 10 > th dose independent rect. 6 3
919 66.36 atmosphere 1015.0 10 < th dose independent rect. 6 3
920 66.36 temperature 10.0 10 > th dose independent rect. 9 21
926 66.37 atmosphere 1000.0 270 > th dose independent rect. 22 5
928 66.37 humidity 80.0 30 > th dose dependent rect. 6 1
934 66.38 precipitation 0.1 270 < th dose independent rect. 7 20
940 66.38 precipitation 0.1 270 < th dose dependent rect. 7 20
942 66.39 wind 9.0 270 < th dose independent rect. 7 20
964 66.41 temperature 30.0 30 < th dose independent rect. 6 18
967 66.41 temperature 10.0 270 > th dose dependent rect. 3 4
976 66.42 atmosphere 995.0 10 > th dose independent rect. 7 23
982 66.43 wind 9.0 4320 > th dose independent rect. 14 18
984 66.43 wind 9.0 10 < th dose dependent rect. 6 3
990 66.44 atmosphere 1005.0 4320 < th dose independent rect. 22 1
995 66.44 humidity 50.0 10 > th dose dependent rect. 6 18